Variant report

Variant	rs4081545
Chromosome Location	chr1:173159516-173159517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172940580..172943092-chr1:173158852..173161378,2	K562	blood:
2	chr1:173158069..173160329-chr1:173169696..173171917,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10127495	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10157163	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10158467	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10912553	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10912554	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912555	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912564	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11811856	0.91[CEU][hapmap]
rs3861950	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4090391	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4916311	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4916312	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4916313	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56028318	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61826341	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6665456	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6676785	0.90[CEU][hapmap];0.90[CHB][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6691738	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7514229	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521390	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7525284	0.90[CEU][hapmap];0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs7553711	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173150200-173159600	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
3	chr1:173154800-173164600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:173155800-173159600	Weak transcription	Thymus	Thymus
5	chr1:173156600-173159600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:173157800-173162200	Genic enhancers	HSMM	muscle
7	chr1:173158000-173159800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:173158200-173160800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:173158400-173160400	Enhancers	Fetal Thymus	thymus
10	chr1:173158400-173160800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:173158400-173161000	Enhancers	Dnd41	blood
12	chr1:173158600-173159600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:173158600-173159600	Weak transcription	HSMMtube	muscle
14	chr1:173158600-173160600	Enhancers	HUVEC	blood vessel
15	chr1:173158600-173160800	Enhancers	Fetal Heart	heart
16	chr1:173158800-173159600	Enhancers	Adipose Nuclei	Adipose
17	chr1:173158800-173160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:173158800-173160800	Enhancers	Fetal Muscle Trunk	muscle
19	chr1:173158800-173160800	Enhancers	Osteobl	bone
20	chr1:173158800-173161000	Enhancers	HMEC	breast
21	chr1:173158800-173170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:173159000-173160000	Enhancers	Brain Hippocampus Middle	brain
23	chr1:173159000-173160400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:173159000-173160800	Enhancers	Fetal Muscle Leg	muscle
25	chr1:173159200-173159800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:173159200-173159800	Enhancers	Colon Smooth Muscle	Colon
27	chr1:173159200-173160000	Enhancers	Small Intestine	intestine
28	chr1:173159200-173160000	Enhancers	Stomach Mucosa	stomach
29	chr1:173159200-173160200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr1:173159200-173160400	Enhancers	Lung	lung
31	chr1:173159200-173160400	Enhancers	Rectal Smooth Muscle	rectum
32	chr1:173159200-173160400	Flanking Active TSS	Hela-S3	cervix
33	chr1:173159200-173160600	Enhancers	Fetal Brain Male	brain
34	chr1:173159200-173160800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:173159200-173160800	Enhancers	Psoas Muscle	Psoas
36	chr1:173159200-173160800	Enhancers	NHDF-Ad	bronchial
37	chr1:173159200-173160800	Enhancers	NHEK	skin
38	chr1:173159200-173161000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr1:173159200-173161000	Enhancers	Liver	Liver
40	chr1:173159200-173161200	Enhancers	Left Ventricle	heart
41	chr1:173159400-173159600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr1:173159400-173159800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:173159400-173159800	Enhancers	Brain Anterior Caudate	brain
44	chr1:173159400-173159800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:173159400-173159800	Enhancers	Esophagus	oesophagus
46	chr1:173159400-173159800	Enhancers	Fetal Kidney	kidney
47	chr1:173159400-173159800	Enhancers	Fetal Stomach	stomach
48	chr1:173159400-173159800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr1:173159400-173160000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr1:173159400-173160000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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