Variant report

Variant	rs6661173
Chromosome Location	chr1:173160283-173160284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172940580..172943092-chr1:173158852..173161378,2	K562	blood:
2	chr1:173158069..173160329-chr1:173169696..173171917,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489267	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10912556	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10912564	0.82[JPT][hapmap]
rs12405297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12407263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12408661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845510	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845536	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845558	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845585	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34787633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35773750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3861950	1.00[JPT][hapmap]
rs4090389	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41478644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55768226	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56254523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56710054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57512735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59501378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60818642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61416957	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6660950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6662505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6662851	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6663707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6674433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676785	0.82[JPT][hapmap]
rs6689152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6699280	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6703778	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74126312	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74126364	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7514229	1.00[JPT][hapmap]
rs7518045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525284	1.00[JPT][hapmap]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173154800-173164600	Weak transcription	Primary B cells from cord blood	blood
3	chr1:173157800-173162200	Genic enhancers	HSMM	muscle
4	chr1:173158200-173160800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:173158400-173160400	Enhancers	Fetal Thymus	thymus
6	chr1:173158400-173160800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:173158400-173161000	Enhancers	Dnd41	blood
8	chr1:173158600-173160600	Enhancers	HUVEC	blood vessel
9	chr1:173158600-173160800	Enhancers	Fetal Heart	heart
10	chr1:173158800-173160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:173158800-173160800	Enhancers	Fetal Muscle Trunk	muscle
12	chr1:173158800-173160800	Enhancers	Osteobl	bone
13	chr1:173158800-173161000	Enhancers	HMEC	breast
14	chr1:173158800-173170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:173159000-173160400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:173159000-173160800	Enhancers	Fetal Muscle Leg	muscle
17	chr1:173159200-173160400	Enhancers	Lung	lung
18	chr1:173159200-173160400	Enhancers	Rectal Smooth Muscle	rectum
19	chr1:173159200-173160400	Flanking Active TSS	Hela-S3	cervix
20	chr1:173159200-173160600	Enhancers	Fetal Brain Male	brain
21	chr1:173159200-173160800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:173159200-173160800	Enhancers	Psoas Muscle	Psoas
23	chr1:173159200-173160800	Enhancers	NHDF-Ad	bronchial
24	chr1:173159200-173160800	Enhancers	NHEK	skin
25	chr1:173159200-173161000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:173159200-173161000	Enhancers	Liver	Liver
27	chr1:173159200-173161200	Enhancers	Left Ventricle	heart
28	chr1:173159400-173160400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:173159400-173160400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:173159400-173160400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:173159400-173160400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr1:173159400-173160400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:173159400-173160400	Enhancers	Brain Substantia Nigra	brain
34	chr1:173159400-173160400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr1:173159400-173160400	Enhancers	Fetal Lung	lung
36	chr1:173159400-173160400	Enhancers	Gastric	stomach
37	chr1:173159400-173160400	Enhancers	Ovary	ovary
38	chr1:173159400-173160400	Enhancers	Spleen	Spleen
39	chr1:173159400-173160400	Enhancers	A549	lung
40	chr1:173159400-173160600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:173159400-173160600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:173159400-173160600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:173159400-173160600	Enhancers	Duodenum Mucosa	Duodenum
44	chr1:173159400-173160600	Enhancers	Pancreas	Pancrea
45	chr1:173159400-173160600	Enhancers	NHLF	lung
46	chr1:173159400-173160800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:173159400-173160800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:173159400-173160800	Enhancers	Colonic Mucosa	Colon
49	chr1:173159400-173160800	Enhancers	Right Atrium	heart
50	chr1:173159400-173160800	Enhancers	HepG2	liver

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