Variant report

Variant	rs10912556
Chromosome Location	chr1:173148294-173148295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10127728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10489267	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs12239845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16845543	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs16845585	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs3861950	0.82[JPT][hapmap]
rs6661173	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6676785	1.00[JPT][hapmap]
rs73036292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7514229	0.82[JPT][hapmap]
rs7518045	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7525284	0.82[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10912556	C1orf105	cis	cerebellum	SCAN
rs10912556	TNFSF18	cis	parietal	SCAN
rs10912556	FMO6P	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173132200-173158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173142400-173150800	Weak transcription	HSMMtube	muscle
3	chr1:173143000-173150600	Weak transcription	HSMM	muscle
4	chr1:173143000-173159000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:173145400-173152400	Weak transcription	HUVEC	blood vessel
6	chr1:173147400-173148600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr1:173147600-173148800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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