Variant report

Variant	rs16845585
Chromosome Location	chr1:173164811-173164812
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10489267	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10912556	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10912564	0.82[JPT][hapmap]
rs12405297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12407263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12408661	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845510	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845536	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845543	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845558	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34787633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35773750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3861950	1.00[JPT][hapmap]
rs3861951	0.81[AFR][1000 genomes]
rs4090389	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41478644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55768226	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56254523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56710054	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57512735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59501378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60818642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61416957	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6660950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6661173	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662505	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6662851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6663707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6674433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6676785	0.82[JPT][hapmap]
rs6689152	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6699280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6703778	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74126312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74126364	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7514229	1.00[JPT][hapmap]
rs7518045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7525284	1.00[JPT][hapmap]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173158800-173170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:173160400-173166600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:173160400-173174400	Weak transcription	Spleen	Spleen
5	chr1:173160600-173171800	Weak transcription	NHLF	lung
6	chr1:173160600-173176000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:173160800-173168000	Weak transcription	HepG2	liver
8	chr1:173160800-173171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:173162000-173166400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:173162200-173165200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:173163200-173171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:173163400-173171800	Weak transcription	Osteobl	bone
13	chr1:173163600-173166000	Weak transcription	HSMMtube	muscle
14	chr1:173164200-173166200	Genic enhancers	HSMM	muscle
15	chr1:173164400-173165400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr1:173164400-173165400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:173164400-173165800	Enhancers	Primary B cells from peripheral blood	blood
18	chr1:173164600-173165000	Genic enhancers	Primary hematopoietic stem cells	blood
19	chr1:173164600-173165000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:173164600-173165000	Enhancers	Left Ventricle	heart
21	chr1:173164600-173165200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:173164600-173165200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr1:173164600-173165200	Enhancers	Fetal Thymus	thymus
24	chr1:173164600-173165400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:173164600-173165800	Enhancers	Primary B cells from cord blood	blood
26	chr1:173164600-173166000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr1:173164600-173166200	Genic enhancers	HUVEC	blood vessel
28	chr1:173164600-173166400	Enhancers	Dnd41	blood
29	chr1:173164800-173165200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:173164800-173165200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr1:173164800-173165200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr1:173164800-173165400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:173164800-173165600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr1:173164800-173165800	Flanking Active TSS	GM12878-XiMat	blood

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