Variant report

Variant	rs3862387
Chromosome Location	chr11:65939921-65939922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65938428..65942314-chr11:65944673..65947481,3	MCF-7	breast:
2	chr11:65937498..65939966-chr11:65945396..65947258,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11823726	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12419425	0.93[ASN][1000 genomes]
rs12420458	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17147325	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17147371	0.88[ASN][1000 genomes]
rs17307346	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2282567	0.83[ASN][1000 genomes]
rs3741370	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3782081	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4930337	0.89[ASN][1000 genomes]
rs4930340	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55835736	0.95[ASN][1000 genomes]
rs55944083	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56269595	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57579741	0.83[ASN][1000 genomes]
rs61890288	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61890290	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61891385	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61891827	0.92[ASN][1000 genomes]
rs873491	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv1804701	chr11:65922589-65957003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1813498	chr11:65922589-65957003	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv362	chr11:65927138-65948793	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3517341	chr11:65932626-65940474	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3517344	chr11:65932976-65940374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1806665	chr11:65933975-65957003	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1809732	chr11:65934549-65956577	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
2	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
3	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
6	chr11:65918000-65949200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:65920400-65954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:65924800-65943200	Weak transcription	NHEK	skin
9	chr11:65925400-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:65925600-65952800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:65925800-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:65927200-65951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:65927200-65951000	Weak transcription	Pancreas	Pancrea
14	chr11:65927200-65958400	Weak transcription	Gastric	stomach
15	chr11:65927600-65947600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:65928600-65945000	Weak transcription	GM12878-XiMat	blood
17	chr11:65928800-65957000	Weak transcription	Left Ventricle	heart
18	chr11:65929400-65960200	Weak transcription	HSMM	muscle
19	chr11:65929600-65944400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:65929600-65946400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
22	chr11:65929800-65944400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:65930000-65960200	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:65930000-65960800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:65930200-65942600	Weak transcription	Adipose Nuclei	Adipose
26	chr11:65932800-65942400	Weak transcription	Placenta	Placenta
27	chr11:65934400-65949200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:65936000-65947000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:65936400-65956800	Weak transcription	Fetal Intestine Small	intestine
30	chr11:65937000-65956000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:65937400-65958200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:65937800-65950600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:65938200-65946800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:65938200-65953000	Weak transcription	Thymus	Thymus
35	chr11:65938400-65978000	Weak transcription	Aorta	Aorta
36	chr11:65938600-65949000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:65938600-65960800	Weak transcription	Dnd41	blood
38	chr11:65939400-65940200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:65939400-65940200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr11:65939400-65940200	Enhancers	Osteobl	bone
41	chr11:65939400-65940400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:65939400-65940600	Enhancers	NH-A	brain
43	chr11:65939400-65960200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:65939600-65940000	Enhancers	Fetal Kidney	kidney
45	chr11:65939600-65940000	Enhancers	HMEC	breast
46	chr11:65939600-65940000	Enhancers	NHDF-Ad	bronchial
47	chr11:65939600-65940200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:65939600-65940200	Strong transcription	Primary B cells from cord blood	blood
49	chr11:65939600-65940200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:65939600-65940200	Enhancers	A549	lung

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