Variant report

Variant	rs55835736
Chromosome Location	chr11:65896397-65896398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65892293..65894742-chr11:65895992..65899282,4	K562	blood:
2	chr11:65844532..65851114-chr11:65890610..65896417,9	MCF-7	breast:
3	chr11:65835889..65841300-chr11:65890203..65896604,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000255038	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11823726	0.93[ASN][1000 genomes]
rs12419425	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12420458	0.97[ASN][1000 genomes]
rs17147325	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17147371	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3741370	0.87[ASN][1000 genomes]
rs3782081	0.87[ASN][1000 genomes]
rs3862387	0.95[ASN][1000 genomes]
rs4930337	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4930340	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55944083	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56269595	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56314482	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61890288	0.93[ASN][1000 genomes]
rs61890290	0.97[ASN][1000 genomes]
rs61891385	0.83[ASN][1000 genomes]
rs61891827	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs873491	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65880400-65905000	Weak transcription	Fetal Stomach	stomach
2	chr11:65887200-65900400	Weak transcription	Fetal Brain Male	brain
3	chr11:65888400-65909800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:65893600-65896400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:65893600-65896600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:65893600-65896600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:65893600-65896600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:65893600-65897200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:65893600-65897400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:65893600-65897600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:65893800-65896400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:65894200-65896600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:65894200-65904000	Weak transcription	HepG2	liver
14	chr11:65894400-65904600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:65894400-65909000	Weak transcription	K562	blood
16	chr11:65894600-65900800	Weak transcription	Fetal Intestine Small	intestine
17	chr11:65894600-65901800	Weak transcription	Hela-S3	cervix
18	chr11:65894800-65896400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:65894800-65901000	Weak transcription	Fetal Brain Female	brain
20	chr11:65894800-65901200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr11:65894800-65902600	Enhancers	Primary B cells from peripheral blood	blood
22	chr11:65894800-65912200	Weak transcription	Thymus	Thymus
23	chr11:65895000-65900800	Weak transcription	Gastric	stomach
24	chr11:65895000-65901200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr11:65895000-65901400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:65895000-65909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:65895000-65913800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:65895000-65917600	Weak transcription	HSMM	muscle
29	chr11:65895200-65896400	Weak transcription	Left Ventricle	heart
30	chr11:65895200-65897600	Weak transcription	Spleen	Spleen
31	chr11:65895200-65898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:65895200-65899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:65895200-65900200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:65895200-65900600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:65895200-65900800	Weak transcription	Right Atrium	heart
36	chr11:65895200-65901000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:65895200-65901200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr11:65895200-65903000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:65895200-65903400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:65895200-65904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:65895200-65905000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:65895200-65905000	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:65895200-65905000	Weak transcription	Right Ventricle	heart
44	chr11:65895200-65907600	Weak transcription	Pancreas	Pancrea
45	chr11:65895200-65912200	Weak transcription	Lung	lung
46	chr11:65895200-65913000	Weak transcription	Psoas Muscle	Psoas
47	chr11:65895400-65896400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:65895400-65896400	Enhancers	Primary B cells from cord blood	blood
49	chr11:65895400-65898600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:65895400-65899400	Weak transcription	Primary hematopoietic stem cells	blood

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