Variant report

Variant	rs61891385
Chromosome Location	chr11:66038775-66038776
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:66034813..66037719-chr11:66037930..66039835,3	MCF-7	breast:
2	chr11:66036265..66039186-chr11:66074799..66077052,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174903	Chromatin interaction
ENSG00000254762	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11823726	0.83[ASN][1000 genomes]
rs12420458	0.86[ASN][1000 genomes]
rs17307346	0.81[AMR][1000 genomes]
rs2282567	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3741370	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3782081	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3862387	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55835736	0.83[ASN][1000 genomes]
rs57579741	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61890288	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61890290	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61891827	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66037000-66039400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:66037000-66039800	Weak transcription	Small Intestine	intestine
3	chr11:66037200-66039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:66037200-66039400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:66037200-66039400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:66037200-66039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:66037200-66039400	Weak transcription	Ovary	ovary
8	chr11:66037200-66039400	Weak transcription	HSMMtube	muscle
9	chr11:66037200-66039600	Weak transcription	Aorta	Aorta
10	chr11:66037200-66039800	Weak transcription	Fetal Kidney	kidney
11	chr11:66037400-66039200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:66037400-66039200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:66037400-66044600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:66037400-66044800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:66037600-66038800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:66037600-66039000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:66037600-66039000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:66037600-66039000	Weak transcription	HUVEC	blood vessel
19	chr11:66037600-66039200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:66037600-66039200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:66037600-66039200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:66037600-66039200	Weak transcription	Brain Germinal Matrix	brain
23	chr11:66037600-66039200	Weak transcription	Fetal Brain Female	brain
24	chr11:66037600-66039200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:66037600-66039400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:66037600-66039400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:66037600-66039400	Weak transcription	Fetal Brain Male	brain
28	chr11:66037600-66039400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:66037600-66039400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:66037600-66039400	Weak transcription	HMEC	breast
31	chr11:66037600-66039400	Weak transcription	HSMM	muscle
32	chr11:66037600-66039600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr11:66037600-66039600	Genic enhancers	Spleen	Spleen
34	chr11:66037600-66039600	Weak transcription	NHDF-Ad	bronchial
35	chr11:66037600-66040000	Weak transcription	NH-A	brain
36	chr11:66037600-66043600	Strong transcription	Osteobl	bone
37	chr11:66037600-66044600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:66037600-66045000	Genic enhancers	Fetal Thymus	thymus
39	chr11:66037800-66039000	Weak transcription	Brain Substantia Nigra	brain
40	chr11:66037800-66039000	Weak transcription	HepG2	liver
41	chr11:66037800-66039200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:66037800-66039200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:66037800-66039200	Weak transcription	Hela-S3	cervix
44	chr11:66037800-66039400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr11:66037800-66040000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:66037800-66040000	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr11:66037800-66044000	Strong transcription	NHEK	skin
48	chr11:66037800-66044200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:66037800-66044600	Strong transcription	Fetal Intestine Small	intestine
50	chr11:66037800-66044800	Strong transcription	Fetal Stomach	stomach

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