The 2.0 version of rSNPBase

Variant report

Variant rs3862747
Chromosome Location chr13:48557219-48557220
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48514400-48574000 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr13:48532200-48565200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr13:48532400-48559400 Weak transcription Gastric stomach
4 chr13:48532400-48565200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr13:48534000-48560800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
6 chr13:48534200-48573200 Weak transcription Brain Angular Gyrus brain
7 chr13:48534400-48574400 Weak transcription Small Intestine intestine
8 chr13:48535000-48564800 Weak transcription NHLF lung
9 chr13:48537200-48574200 Weak transcription Colonic Mucosa Colon
10 chr13:48537400-48560200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr13:48537400-48574000 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr13:48537400-48574400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr13:48538000-48567200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr13:48538400-48574000 Weak transcription Hela-S3 cervix
15 chr13:48538600-48559800 Weak transcription HUVEC blood vessel
16 chr13:48538800-48564800 Weak transcription Brain Germinal Matrix brain
17 chr13:48539600-48571200 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr13:48540000-48574200 Weak transcription H9 Cell Line embryonic stem cell
19 chr13:48540200-48559000 Weak transcription Primary neutrophils fromperipheralblood blood
20 chr13:48540800-48565000 Weak transcription NH-A brain
21 chr13:48542000-48558800 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr13:48542400-48564800 Weak transcription Rectal Smooth Muscle rectum
23 chr13:48542400-48565200 Weak transcription Psoas Muscle Psoas
24 chr13:48542400-48567000 Weak transcription Esophagus oesophagus
25 chr13:48542800-48559000 Weak transcription HSMM muscle
26 chr13:48543000-48574400 Weak transcription ES-WA7 Cell Line embryonic stem cell
27 chr13:48543400-48560600 Weak transcription HepG2 liver
28 chr13:48546400-48559400 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr13:48546400-48564600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr13:48546400-48565200 Weak transcription Pancreas Pancrea
31 chr13:48546600-48559200 Weak transcription Brain Substantia Nigra brain
32 chr13:48546600-48574400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr13:48546600-48574800 Weak transcription Spleen Spleen
34 chr13:48546800-48559000 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr13:48546800-48559000 Weak transcription Stomach Smooth Muscle stomach
36 chr13:48546800-48559200 Weak transcription Colon Smooth Muscle Colon
37 chr13:48546800-48560600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr13:48546800-48564200 Weak transcription Lung lung
39 chr13:48546800-48564600 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr13:48546800-48567000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr13:48546800-48567200 Weak transcription Brain Cingulate Gyrus brain
42 chr13:48546800-48571600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr13:48547000-48559200 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr13:48547400-48559200 Weak transcription Brain Anterior Caudate brain
45 chr13:48547800-48559200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr13:48548000-48557400 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr13:48548000-48559000 Weak transcription Primary monocytes fromperipheralblood blood
48 chr13:48548000-48559000 Weak transcription Primary T cells fromperipheralblood blood
49 chr13:48548000-48559000 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr13:48548000-48559600 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015