Variant report

Variant	rs61972210
Chromosome Location	chr13:48445022-48445023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1104351	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840968	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841315	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12874522	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326133	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326137	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1359616	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886977	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094193	1.00[ASN][1000 genomes]
rs2094195	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104481	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182373	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182378	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406694	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862747	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941618	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941620	1.00[ASN][1000 genomes]
rs4942720	1.00[ASN][1000 genomes]
rs4942721	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942724	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942732	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942734	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942736	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942740	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61972223	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61972227	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61973264	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61973265	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61973266	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61974562	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61974563	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61974564	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61974579	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561414	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561416	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561421	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561425	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561426	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324368	0.80[EUR][1000 genomes]
rs7326418	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329137	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329266	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329615	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335797	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990541	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991892	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996051	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996581	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998786	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001032	0.82[EUR][1000 genomes]
rs8001509	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002482	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002847	0.84[EUR][1000 genomes]
rs840429	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840432	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840435	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840437	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs840439	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316340	1.00[ASN][1000 genomes]
rs943066	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526419	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526431	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534884	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9562792	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9567988	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61972210	MED4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48444200-48448000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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