Variant report

Variant rs3862828
Chromosome Location chr6:118940770-118940771
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:118912200-118966200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr6:118920800-118951200 Weak transcription HSMM muscle
3 chr6:118925000-118945000 Weak transcription Primary B cells from cord blood blood
4 chr6:118926600-118947000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr6:118927000-118965000 Weak transcription NHLF lung
6 chr6:118928000-118952000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr6:118928800-118951800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr6:118928800-118951800 Weak transcription Spleen Spleen
9 chr6:118929200-118947000 Weak transcription Thymus Thymus
10 chr6:118931600-118970400 Weak transcription NH-A brain
11 chr6:118932800-118943000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr6:118933600-118946800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr6:118935600-118951400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr6:118937000-118947000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr6:118937200-118946200 Weak transcription Dnd41 blood
16 chr6:118937800-118947000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr6:118938800-118944600 Weak transcription Fetal Lung lung
18 chr6:118939000-118940800 Enhancers Brain Hippocampus Middle brain
19 chr6:118939000-118944200 Enhancers Skeletal Muscle Male skeletal muscle
20 chr6:118939200-118943400 Weak transcription Right Ventricle heart
21 chr6:118939200-118946000 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr6:118939200-118946400 Enhancers Skeletal Muscle Female skeletal muscle
23 chr6:118939400-118940800 Enhancers Primary T helper cells PMA-I stimulated --
24 chr6:118939400-118942400 Enhancers Primary T cells fromperipheralblood blood
25 chr6:118939400-118942400 Enhancers Fetal Adrenal Gland Adrenal Gland
26 chr6:118939600-118940800 Enhancers Brain Inferior Temporal Lobe brain
27 chr6:118939600-118940800 Enhancers Stomach Mucosa stomach
28 chr6:118939600-118941000 Enhancers Primary T helper cells fromperipheralblood blood
29 chr6:118939600-118941200 Enhancers Primary T helper naive cells fromperipheralblood blood
30 chr6:118939600-118943600 Weak transcription Primary T cells from cord blood blood
31 chr6:118939800-118940800 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr6:118939800-118940800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
33 chr6:118939800-118940800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
34 chr6:118939800-118940800 Enhancers Adipose Nuclei Adipose
35 chr6:118939800-118940800 Enhancers Left Ventricle heart
36 chr6:118939800-118940800 Enhancers Lung lung
37 chr6:118939800-118940800 Enhancers Right Atrium heart
38 chr6:118939800-118941600 Enhancers Primary T killer memory cells from peripheral blood blood
39 chr6:118939800-118942600 Enhancers Pancreas Pancrea
40 chr6:118940000-118940800 Enhancers Psoas Muscle Psoas
41 chr6:118940000-118941000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr6:118940000-118941200 Weak transcription Fetal Muscle Trunk muscle
43 chr6:118940000-118942600 Weak transcription Primary hematopoietic stem cells blood
44 chr6:118940000-118942800 Weak transcription Fetal Thymus thymus
45 chr6:118940200-118940800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr6:118940200-118940800 Enhancers Ovary ovary
47 chr6:118940200-118947000 Weak transcription K562 blood
48 chr6:118940200-118966400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr6:118940400-118940800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr6:118940400-118941600 Weak transcription Liver Liver

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