Variant report

Variant	rs3867127
Chromosome Location	chr11:64655032-64655033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64544541..64547217-chr11:64651597..64655182,4	K562	blood:
2	chr11:64655003..64657032-chr11:65265226..65266978,2	K562	blood:
3	chr11:64653740..64655395-chr11:64682265..64684591,2	MCF-7	breast:
4	chr11:64651561..64659485-chr11:64681552..64686807,18	K562	blood:
5	chr11:64542629..64545284-chr11:64654833..64657442,2	MCF-7	breast:
6	chr11:64654999..64656996-chr11:64793791..64795632,2	K562	blood:
7	chr11:64654051..64656585-chr11:65027295..65030024,2	K562	blood:
8	chr11:64654425..64656235-chr11:64883004..64885352,2	K562	blood:
9	chr11:64534108..64536503-chr11:64654946..64656534,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251562	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000014138	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10488702	1.00[CEU][hapmap]
rs11827610	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12286941	0.91[EUR][1000 genomes]
rs17146407	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17146506	1.00[CEU][hapmap]
rs17146508	1.00[CEU][hapmap]
rs17146511	1.00[CEU][hapmap]
rs17146515	1.00[CEU][hapmap]
rs17146519	1.00[CEU][hapmap]
rs17146528	1.00[CEU][hapmap]
rs17146539	1.00[CEU][hapmap]
rs17146541	1.00[CEU][hapmap]
rs17146543	1.00[CEU][hapmap]
rs17146544	1.00[CEU][hapmap]
rs17146569	1.00[CEU][hapmap]
rs17146575	1.00[CEU][hapmap]
rs35079323	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs35115827	0.88[EUR][1000 genomes]
rs3888184	1.00[CEU][hapmap]
rs4320955	1.00[CEU][hapmap]
rs57365630	0.91[EUR][1000 genomes]
rs59677833	0.85[EUR][1000 genomes]
rs60711419	0.88[EUR][1000 genomes]
rs61741079	0.91[EUR][1000 genomes]
rs61742063	0.91[EUR][1000 genomes]
rs628595	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs643949	0.80[EUR][1000 genomes]
rs7102350	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7103328	1.00[CEU][hapmap]
rs7113751	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7123368	1.00[CEU][hapmap]
rs7482817	1.00[CEU][hapmap]
rs7942472	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
2	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
3	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
4	nsv897704	chr11:64584987-64701030	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
5	nsv897705	chr11:64591679-64701030	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
6	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
7	nsv897707	chr11:64600002-64701030	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
8	nsv897708	chr11:64602757-64695271	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
9	nsv360	chr11:64632395-64659636	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1003 gene(s)	inside rSNPs	diseases
10	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
11	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64647000-64655200	Weak transcription	Esophagus	oesophagus
2	chr11:64647000-64655400	Weak transcription	Ovary	ovary
3	chr11:64647200-64655600	Weak transcription	Gastric	stomach
4	chr11:64647400-64655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:64647400-64655600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:64648000-64655200	Weak transcription	Left Ventricle	heart
7	chr11:64648000-64655200	Weak transcription	Lung	lung
8	chr11:64648000-64655200	Weak transcription	Pancreas	Pancrea
9	chr11:64648400-64655600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:64648600-64655200	Weak transcription	Thymus	Thymus
11	chr11:64649200-64655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:64649200-64655200	Weak transcription	Right Atrium	heart
13	chr11:64650200-64655200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:64651400-64655200	Weak transcription	Right Ventricle	heart
15	chr11:64651600-64658600	Enhancers	Placenta	Placenta
16	chr11:64652200-64656400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:64652400-64655200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:64652800-64655200	Enhancers	Stomach Mucosa	stomach
19	chr11:64652800-64659800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:64653000-64655200	Weak transcription	Colonic Mucosa	Colon
21	chr11:64653200-64655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:64653200-64655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:64653400-64655200	Weak transcription	HMEC	breast
24	chr11:64653600-64655200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:64653600-64655200	Weak transcription	NH-A	brain
26	chr11:64653600-64655200	Weak transcription	NHLF	lung
27	chr11:64653600-64655400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:64653600-64655600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:64653800-64655200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:64653800-64655200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:64653800-64655200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:64653800-64655200	Weak transcription	Osteobl	bone
33	chr11:64653800-64655600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:64653800-64655600	Weak transcription	Fetal Lung	lung
35	chr11:64654600-64655200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:64654600-64657000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr11:64654800-64655200	Enhancers	H1 Cell Line	embryonic stem cell
38	chr11:64654800-64655200	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr11:64654800-64655200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:64654800-64655200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr11:64654800-64655200	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr11:64654800-64655200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr11:64654800-64655200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:64654800-64655200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:64654800-64655200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr11:64654800-64655200	Enhancers	Hela-S3	cervix
47	chr11:64654800-64655600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:64654800-64655600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr11:64654800-64655600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr11:64654800-64655600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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