Variant report

Variant	rs17146515
Chromosome Location	chr11:64728538-64728539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr11:64728047-64728557	PBDE	blood:	n/a	n/a
2	CEBPD	chr11:64728169-64728588	K562	blood:	n/a	n/a
3	CEBPD	chr11:64728138-64728590	K562	blood:	n/a	n/a
4	GATA3	chr11:64728030-64728658	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr11:64728098-64728600	SK-N-SH	brain:	n/a	n/a
6	GATA3	chr11:64727979-64728584	SH-SY5Y	brain:	n/a	n/a
7	EP300	chr11:64727815-64728759	SK-N-SH	brain:	n/a	chr11:64728406-64728420
8	GATA2	chr11:64728144-64728594	SH-SY5Y	brain:	n/a	n/a
9	GATA1	chr11:64727747-64728761	K562	blood:	n/a	n/a
10	TEAD4	chr11:64728052-64728569	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64728080..64729823-chr11:64778498..64780871,2	MCF-7	breast:
2	chr11:64727356..64729952-chr11:64739370..64742304,2	K562	blood:
3	chr11:64691117..64693562-chr11:64726636..64728966,2	K562	blood:
4	chr11:64689666..64692617-chr11:64726636..64729077,2	K562	blood:

No data

Variant related genes	Relation type
C11orf85	TF binding region
ENSG00000168070	Chromatin interaction
ENSG00000068971	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10488702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11827610	1.00[CEU][hapmap]
rs17146407	1.00[CEU][hapmap]
rs17146506	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17146508	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146511	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146519	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146528	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146539	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17146541	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17146543	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146544	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17146569	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs17146575	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs17673281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35079323	1.00[CEU][hapmap]
rs3867127	1.00[CEU][hapmap]
rs3888184	1.00[CEU][hapmap]
rs4320955	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58187497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60401184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60935617	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs628595	1.00[CEU][hapmap]
rs7102350	1.00[CEU][hapmap]
rs7103328	1.00[CEU][hapmap]
rs7113751	1.00[CEU][hapmap]
rs7123368	1.00[CEU][hapmap]
rs7482817	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7942472	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	nsv976460	chr11:64727780-64743097	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64726600-64728600	Enhancers	NHEK	skin
2	chr11:64727000-64728600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:64727000-64728600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:64727000-64728800	Enhancers	K562	blood
5	chr11:64727800-64728600	Enhancers	Fetal Intestine Small	intestine
6	chr11:64728000-64728600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:64728000-64728600	Enhancers	HepG2	liver
8	chr11:64728400-64728600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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