Variant report

Variant	rs17146506
Chromosome Location	chr11:64704630-64704631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64703443..64707909-chr11:64708011..64711926,5	K562	blood:
2	chr11:64703654..64705753-chr11:64764551..64767284,2	MCF-7	breast:
3	chr11:64691374..64695669-chr11:64701131..64705582,6	MCF-7	breast:
4	chr11:64696369..64699688-chr11:64704058..64706503,4	K562	blood:
5	chr11:64700459..64702214-chr11:64704518..64706728,2	K562	blood:

Variant related genes	Relation type
ENSG00000068971	Chromatin interaction
ENSG00000168070	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10488702	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11827610	1.00[CEU][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap]
rs17146407	1.00[CEU][hapmap]
rs17146508	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17146511	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs17146515	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17146519	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17146528	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17146539	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs17146541	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs17146543	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17146544	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17146569	1.00[CEU][hapmap]
rs17146575	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs35079323	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs3867127	1.00[CEU][hapmap]
rs3888184	1.00[CEU][hapmap]
rs4320955	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs57393537	0.84[EUR][1000 genomes]
rs58187497	0.89[EUR][1000 genomes]
rs60401184	1.00[EUR][1000 genomes]
rs60798873	0.84[EUR][1000 genomes]
rs60935617	1.00[EUR][1000 genomes]
rs61024397	0.84[EUR][1000 genomes]
rs628595	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs647489	0.84[EUR][1000 genomes]
rs7102350	1.00[CEU][hapmap];0.85[MEX][hapmap]
rs7103328	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7113751	1.00[CEU][hapmap]
rs7123368	1.00[CEU][hapmap]
rs7482817	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7942472	1.00[CEU][hapmap]
rs885999	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
2	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
3	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64699000-64705600	Weak transcription	HUVEC	blood vessel
2	chr11:64700800-64704800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:64700800-64706200	Weak transcription	HSMMtube	muscle
4	chr11:64701000-64705200	Weak transcription	NH-A	brain
5	chr11:64701200-64705200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:64702400-64704800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:64702800-64705200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:64703000-64704800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:64703000-64704800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:64703000-64705000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:64703000-64705200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:64703000-64705600	Weak transcription	Liver	Liver
13	chr11:64703000-64705800	Weak transcription	Lung	lung
14	chr11:64703000-64706600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:64703200-64705000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:64703200-64705200	Weak transcription	Thymus	Thymus
17	chr11:64703200-64705400	Weak transcription	Adipose Nuclei	Adipose
18	chr11:64703200-64708400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:64703400-64705800	Weak transcription	Primary T cells from cord blood	blood
20	chr11:64703400-64706400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:64703600-64705800	Weak transcription	Spleen	Spleen
22	chr11:64703600-64709200	Weak transcription	Ovary	ovary
23	chr11:64703800-64704800	Weak transcription	Fetal Kidney	kidney
24	chr11:64703800-64704800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr11:64703800-64705600	Weak transcription	Fetal Stomach	stomach
26	chr11:64703800-64706800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:64704400-64704800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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