Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64710573..64712542-chr11:64732691..64735611,2	K562	blood:
2	chr11:64703443..64707909-chr11:64708011..64711926,5	K562	blood:

Variant related genes	Relation type
ENSG00000168070	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10488702	0.95[EUR][1000 genomes]
rs17146506	1.00[EUR][1000 genomes]
rs17146508	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146511	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146515	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146519	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146528	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146539	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146541	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17146543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17146544	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17146569	0.85[AMR][1000 genomes]
rs17146575	0.85[AMR][1000 genomes]
rs17673281	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4320955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57393537	0.84[EUR][1000 genomes]
rs58187497	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60401184	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60798873	0.84[EUR][1000 genomes]
rs61024397	0.84[EUR][1000 genomes]
rs647489	0.84[EUR][1000 genomes]
rs7482817	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs885999	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
2	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
3	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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