Variant report

Variant	rs3886515
Chromosome Location	chr16:71722209-71722210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71709382..71710975-chr16:71720464..71722276,2	K562	blood:
2	chr16:71713691..71715529-chr16:71719681..71722397,3	MCF-7	breast:
3	chr16:71721961..71724159-chr16:71756139..71758767,2	MCF-7	breast:
4	chr16:71709605..71711105-chr16:71721502..71723632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000040199	Chromatin interaction
ENSG00000261513	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10083757	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10220961	0.85[ASN][1000 genomes]
rs1035545	0.87[ASN][1000 genomes]
rs10775326	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11075890	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11075895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11075900	0.82[ASN][1000 genomes]
rs11539980	0.84[ASN][1000 genomes]
rs11641873	0.85[ASN][1000 genomes]
rs11645467	0.86[ASN][1000 genomes]
rs11646635	0.86[ASN][1000 genomes]
rs11646748	0.86[ASN][1000 genomes]
rs11647873	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11648674	0.90[ASN][1000 genomes]
rs11859729	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11865683	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11866795	0.84[EUR][1000 genomes]
rs12149092	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12149496	0.84[EUR][1000 genomes]
rs12149873	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12447856	0.81[ASN][1000 genomes]
rs12448226	0.93[ASN][1000 genomes]
rs12597065	0.89[ASN][1000 genomes]
rs12920243	0.81[ASN][1000 genomes]
rs12922859	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12923644	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12924258	0.83[ASN][1000 genomes]
rs12926987	0.95[ASN][1000 genomes]
rs12928187	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12930206	0.81[ASN][1000 genomes]
rs12930418	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12935426	0.87[ASN][1000 genomes]
rs13380425	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1392487	0.90[ASN][1000 genomes]
rs2010428	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2036337	0.86[ASN][1000 genomes]
rs2036338	0.81[ASN][1000 genomes]
rs2270829	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2270831	0.81[ASN][1000 genomes]
rs2270832	0.81[ASN][1000 genomes]
rs2278031	0.90[ASN][1000 genomes]
rs2335716	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28439683	0.95[ASN][1000 genomes]
rs28582831	0.93[ASN][1000 genomes]
rs28636800	0.88[ASN][1000 genomes]
rs34158217	0.80[EUR][1000 genomes]
rs34161748	0.95[ASN][1000 genomes]
rs34734042	0.89[ASN][1000 genomes]
rs35173463	0.82[ASN][1000 genomes]
rs35939203	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3751817	0.90[ASN][1000 genomes]
rs3925658	0.90[ASN][1000 genomes]
rs4444347	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4788442	0.86[ASN][1000 genomes]
rs4788549	0.95[ASN][1000 genomes]
rs4788551	0.90[ASN][1000 genomes]
rs4788552	0.90[ASN][1000 genomes]
rs4788554	0.81[ASN][1000 genomes]
rs4788826	0.95[ASN][1000 genomes]
rs4788827	0.95[ASN][1000 genomes]
rs60881203	0.91[ASN][1000 genomes]
rs62053108	0.83[ASN][1000 genomes]
rs6499532	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6499539	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7185997	0.81[ASN][1000 genomes]
rs7186859	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7187877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7188406	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7191593	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7192956	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7195840	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7196498	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7201228	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7201754	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7202288	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7203168	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7203216	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7203231	0.81[EUR][1000 genomes]
rs7404381	0.82[ASN][1000 genomes]
rs8048057	0.95[ASN][1000 genomes]
rs8048210	0.95[ASN][1000 genomes]
rs8051760	0.85[EUR][1000 genomes]
rs8052489	0.95[ASN][1000 genomes]
rs8052999	0.85[ASN][1000 genomes]
rs8053070	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8056823	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8060867	0.81[ASN][1000 genomes]
rs8061613	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8061970	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8062441	0.81[ASN][1000 genomes]
rs8062477	0.81[ASN][1000 genomes]
rs8063535	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs918721	0.89[ASN][1000 genomes]
rs951453	0.86[ASN][1000 genomes]
rs979789	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9921270	0.90[ASN][1000 genomes]
rs9925228	0.89[ASN][1000 genomes]
rs9927336	0.93[ASN][1000 genomes]
rs9927437	0.94[ASN][1000 genomes]
rs9936903	0.95[ASN][1000 genomes]
rs9937280	0.95[ASN][1000 genomes]
rs9939455	0.81[ASN][1000 genomes]
rs9940217	0.95[ASN][1000 genomes]
rs9940707	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv962218	chr16:71645202-71727606	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71672000-71741400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:71675000-71724000	Weak transcription	Esophagus	oesophagus
3	chr16:71683800-71756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:71685200-71741200	Weak transcription	Psoas Muscle	Psoas
5	chr16:71685800-71726000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr16:71687800-71725000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr16:71690600-71733600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr16:71690600-71741200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:71690800-71725600	Weak transcription	Fetal Thymus	thymus
10	chr16:71693000-71756400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr16:71695000-71725200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:71695000-71726000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr16:71695200-71724800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr16:71695200-71725200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:71696400-71725200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr16:71702000-71756200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr16:71703800-71723800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr16:71705000-71741600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr16:71705000-71756200	Weak transcription	Colon Smooth Muscle	Colon
20	chr16:71705000-71756800	Weak transcription	Gastric	stomach
21	chr16:71705200-71732200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr16:71705400-71733000	Weak transcription	Pancreas	Pancrea
23	chr16:71707400-71750200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr16:71707800-71723600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr16:71709600-71724000	Weak transcription	Fetal Kidney	kidney
26	chr16:71710400-71735800	Weak transcription	Right Ventricle	heart
27	chr16:71710600-71722600	Weak transcription	GM12878-XiMat	blood
28	chr16:71710600-71726600	Weak transcription	Fetal Brain Male	brain
29	chr16:71710600-71732200	Weak transcription	Thymus	Thymus
30	chr16:71710600-71741800	Weak transcription	Spleen	Spleen
31	chr16:71710600-71756200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr16:71710600-71756400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr16:71710600-71756800	Weak transcription	Lung	lung
34	chr16:71711000-71722800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr16:71711200-71756400	Weak transcription	K562	blood
36	chr16:71712400-71724800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr16:71712600-71723800	Weak transcription	Colonic Mucosa	Colon
38	chr16:71713200-71734800	Weak transcription	Placenta	Placenta
39	chr16:71713400-71722600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr16:71713400-71722600	Weak transcription	Left Ventricle	heart
41	chr16:71713400-71732200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr16:71713400-71739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr16:71713400-71741600	Weak transcription	NHLF	lung
44	chr16:71713600-71723600	Weak transcription	Brain Anterior Caudate	brain
45	chr16:71713600-71723800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr16:71713800-71723800	Weak transcription	HUVEC	blood vessel
47	chr16:71714600-71724200	Weak transcription	Brain Substantia Nigra	brain
48	chr16:71714600-71733200	Weak transcription	Brain Germinal Matrix	brain
49	chr16:71715400-71723800	Weak transcription	NH-A	brain
50	chr16:71715800-71723400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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