Variant report
Variant | rs11075890 |
---|---|
Chromosome Location | chr16:71622975-71622976 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000157429 | Chromatin interaction |
ENSG00000260886 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10775326 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11075889 | 0.85[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs11075891 | 0.92[ASN][1000 genomes] |
rs11075892 | 0.91[ASN][1000 genomes] |
rs11075895 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs11643690 | 0.91[ASN][1000 genomes] |
rs11647873 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs11648240 | 0.85[AFR][1000 genomes];0.94[ASN][1000 genomes] |
rs11862798 | 0.90[ASN][1000 genomes] |
rs11865683 | 0.82[AMR][1000 genomes] |
rs12444484 | 0.87[ASN][1000 genomes] |
rs12930418 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12932850 | 0.84[ASN][1000 genomes] |
rs13380425 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs1477386 | 0.90[ASN][1000 genomes] |
rs172649 | 0.87[ASN][1000 genomes] |
rs172650 | 0.91[ASN][1000 genomes] |
rs2032920 | 0.94[ASN][1000 genomes] |
rs2113222 | 0.92[ASN][1000 genomes] |
rs2334879 | 0.90[ASN][1000 genomes] |
rs2334883 | 0.91[ASN][1000 genomes] |
rs2334884 | 0.88[ASN][1000 genomes] |
rs2335716 | 0.80[EUR][1000 genomes] |
rs2432519 | 0.91[ASN][1000 genomes] |
rs2432520 | 0.91[ASN][1000 genomes] |
rs2432524 | 0.83[ASN][1000 genomes] |
rs310331 | 0.90[ASN][1000 genomes] |
rs34764568 | 0.87[ASN][1000 genomes] |
rs35939203 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs3829537 | 0.93[ASN][1000 genomes] |
rs3886515 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs4788544 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
rs4788546 | 0.85[AFR][1000 genomes];0.94[ASN][1000 genomes] |
rs4788547 | 0.92[ASN][1000 genomes] |
rs4788809 | 0.93[ASN][1000 genomes] |
rs4788812 | 0.94[ASN][1000 genomes] |
rs4788814 | 0.92[ASN][1000 genomes] |
rs4788817 | 0.83[ASN][1000 genomes] |
rs4788821 | 0.87[ASN][1000 genomes] |
rs62053077 | 0.91[ASN][1000 genomes] |
rs62053078 | 0.91[ASN][1000 genomes] |
rs7186717 | 0.91[ASN][1000 genomes] |
rs7187877 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs7188406 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7195840 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7206039 | 0.91[ASN][1000 genomes] |
rs8056823 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs8061613 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs979789 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9923264 | 0.88[ASN][1000 genomes] |
rs9923336 | 0.89[ASN][1000 genomes] |
rs9930543 | 0.85[AFR][1000 genomes];0.90[ASN][1000 genomes] |
rs9932415 | 0.91[ASN][1000 genomes] |
rs9933961 | 0.90[ASN][1000 genomes] |
rs9939471 | 0.81[ASN][1000 genomes] |
rs9939658 | 0.87[ASN][1000 genomes] |
rs9940142 | 0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3347477 | chr16:71555148-71985177 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
2 | nsv1063338 | chr16:71612346-71752968 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:71620200-71624200 | Weak transcription | Liver | Liver |
2 | chr16:71621800-71624200 | Weak transcription | HepG2 | liver |