Variant report

Variant	rs4788546
Chromosome Location	chr16:71629820-71629821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1035545	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10500559	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1058747	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11075889	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11075890	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11075891	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11075892	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11643690	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11648240	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11648674	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11862798	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12051443	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12051449	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12051506	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12444484	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12927320	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12930418	0.81[ASN][1000 genomes]
rs12932850	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1477386	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582589	0.83[ASN][1000 genomes]
rs172649	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs172650	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2032920	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113222	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2303224	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303225	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2334879	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2334883	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2334884	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2432519	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2432520	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2432524	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs310331	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34764568	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35939203	0.91[ASN][1000 genomes]
rs3752681	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3829537	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3925658	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4788544	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4788547	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4788549	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4788809	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4788812	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788814	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4788817	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4788821	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4788826	0.81[AMR][1000 genomes]
rs4788827	0.80[AMR][1000 genomes]
rs57997630	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62053077	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62053078	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62053107	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62053108	0.83[EUR][1000 genomes]
rs7186717	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7188406	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7195840	0.90[ASN][1000 genomes]
rs7206039	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8048057	0.81[AMR][1000 genomes]
rs8048210	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8052489	0.81[EUR][1000 genomes]
rs8203	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs979789	0.82[ASN][1000 genomes]
rs9923264	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9923336	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9927336	0.81[EUR][1000 genomes]
rs9927437	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9930543	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9932415	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9933961	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9939471	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9939658	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9940142	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9940217	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71627400-71630400	Enhancers	Liver	Liver
2	chr16:71628600-71632200	Enhancers	HepG2	liver

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