Variant report

Variant	rs4788809
Chromosome Location	chr16:71615820-71615821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr16:71615570-71615997	HepG2	liver:	n/a	n/a
2	TBP	chr16:71615533-71616356	HepG2	liver:	n/a	n/a
3	CREB1	chr16:71615371-71616066	HepG2	liver:	n/a	n/a
4	POLR2A	chr16:71615563-71616025	HepG2	liver:	n/a	n/a
5	HNF4G	chr16:71615384-71615913	HepG2	liver:	n/a	chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615621-71615636 chr16:71615620-71615635 chr16:71615621-71615634 chr16:71615739-71615747
6	POLR2A	chr16:71615567-71615975	HepG2	liver:	n/a	n/a
7	FOXA1	chr16:71615385-71616052	HepG2	liver:	n/a	n/a
8	NFIC	chr16:71615400-71616050	HepG2	liver:	n/a	n/a
9	POLR2A	chr16:71615462-71616036	HepG2	liver:	n/a	n/a
10	FOXA1	chr16:71615357-71616216	HepG2	liver:	n/a	n/a
11	NFIC	chr16:71615446-71616075	HepG2	liver:	n/a	n/a
12	ARID3A	chr16:71615636-71616009	HepG2	liver:	n/a	n/a
13	MAFK	chr16:71615578-71615981	HepG2	liver:	n/a	chr16:71615788-71615802
14	EP300	chr16:71615449-71616021	HepG2	liver:	n/a	chr16:71615920-71615930
15	HDAC2	chr16:71615472-71616031	HepG2	liver:	n/a	chr16:71615907-71615921
16	MYBL2	chr16:71615391-71616472	HepG2	liver:	n/a	n/a
17	FOXA2	chr16:71615466-71616027	HepG2	liver:	n/a	n/a
18	MBD4	chr16:71615531-71616045	HepG2	liver:	n/a	n/a
19	TEAD4	chr16:71615411-71616077	HepG2	liver:	n/a	n/a
20	RAD21	chr16:71615529-71615973	HepG2	liver:	n/a	n/a
21	EP300	chr16:71615363-71616048	HepG2	liver:	n/a	chr16:71615920-71615930
22	MXI1	chr16:71615583-71616080	HepG2	liver:	n/a	n/a
23	JUND	chr16:71615651-71616035	HepG2	liver:	n/a	n/a
24	NR2F2	chr16:71615483-71616089	MCF-7	breast:	n/a	n/a
25	MYBL2	chr16:71615322-71616502	HepG2	liver:	n/a	n/a
26	REST	chr16:71615481-71616042	HepG2	liver:	n/a	chr16:71615781-71615801 chr16:71615846-71615860 chr16:71615846-71615866 chr16:71615846-71615866 chr16:71615852-71615861
27	GATA3	chr16:71615608-71615834	MCF-7	breast:	n/a	n/a
28	RCOR1	chr16:71615576-71616102	HepG2	liver:	n/a	n/a
29	SP1	chr16:71615391-71616109	HepG2	liver:	n/a	n/a
30	HNF4A	chr16:71615503-71616077	HepG2	liver:	n/a	chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615621-71615634 chr16:71615739-71615747
31	RFX5	chr16:71615576-71616011	HepG2	liver:	n/a	n/a
32	POLR2A	chr16:71615663-71616147	HepG2	liver:	n/a	n/a
33	HNF4A	chr16:71615478-71615900	HepG2	liver:	n/a	chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615621-71615634 chr16:71615739-71615747
34	SMC3	chr16:71615543-71615973	HepG2	liver:	n/a	n/a
35	RAD21	chr16:71615568-71615968	HepG2	liver:	n/a	n/a
36	MAFK	chr16:71615592-71615992	HepG2	liver:	n/a	chr16:71615788-71615802
37	BHLHE40	chr16:71615706-71616144	HepG2	liver:	n/a	n/a
38	EP300	chr16:71615549-71616009	HepG2	liver:	n/a	chr16:71615920-71615930
39	HEY1	chr16:71615416-71616036	HepG2	liver:	n/a	n/a
40	FOXA1	chr16:71615397-71616152	HepG2	liver:	n/a	n/a
41	CREB1	chr16:71615351-71616072	HepG2	liver:	n/a	n/a
42	FOXA1	chr16:71615431-71616166	HepG2	liver:	n/a	n/a
43	MAX	chr16:71615331-71616261	HepG2	liver:	n/a	n/a
44	MAX	chr16:71615723-71616080	HepG2	liver:	n/a	n/a
45	HNF4A	chr16:71615519-71616001	HepG2	liver:	n/a	chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615620-71615635 chr16:71615622-71615634 chr16:71615620-71615635 chr16:71615621-71615634 chr16:71615739-71615747

No.	Distal block	Cell Line	Cell type
1	chr16:71614455..71616325-chr16:71619608..71621123,2	MCF-7	breast:
2	chr16:71597504..71600428-chr16:71613913..71616967,3	MCF-7	breast:
3	chr16:71611013..71613326-chr16:71614202..71616544,3	MCF-7	breast:

Variant related genes	Relation type
TAT	TF binding region
ENSG00000198650	Chromatin interaction
ENSG00000157429	Chromatin interaction
ENSG00000260886	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1035545	0.91[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10500559	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1058747	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11075889	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11075890	0.93[ASN][1000 genomes]
rs11075891	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11075892	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11075895	0.82[CHD][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap]
rs11539980	0.81[ASW][hapmap];0.92[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs11643690	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11648240	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11648674	0.91[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11859729	0.82[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs11862798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12051443	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12051449	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12051506	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12444484	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12447856	0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs12597065	0.92[CEU][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes]
rs12920243	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs12924258	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12926987	0.81[AMR][1000 genomes]
rs12927320	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12930206	0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap]
rs12930418	0.82[ASN][1000 genomes]
rs12932850	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1392487	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs1477386	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1582589	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs172649	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs172650	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032920	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2036338	0.92[CEU][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs2113222	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2270830	0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs2270831	0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs2270832	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs2278031	0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs2303224	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303225	0.95[CEU][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2334879	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2334883	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2334884	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2432519	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2432520	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2432524	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28439683	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28582831	0.81[AMR][1000 genomes]
rs28636800	0.81[AMR][1000 genomes]
rs310331	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34161748	0.80[EUR][1000 genomes]
rs34764568	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35939203	0.90[ASN][1000 genomes]
rs3752681	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3829537	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3925658	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4444347	0.89[JPT][hapmap]
rs4788544	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4788546	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4788547	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4788549	0.92[CEU][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes]
rs4788551	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs4788808	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs4788812	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4788814	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4788817	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4788821	0.81[ASW][hapmap];0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788826	0.91[CEU][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4788827	0.92[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57997630	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62053077	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62053078	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62053107	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62053108	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7185997	0.92[CEU][hapmap];0.94[JPT][hapmap]
rs7186717	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7188406	0.93[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap];0.95[ASN][1000 genomes]
rs7195840	0.89[ASN][1000 genomes]
rs7201754	0.89[GIH][hapmap];0.89[JPT][hapmap]
rs7202288	0.82[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs7206039	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8048057	0.92[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes]
rs8048210	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes]
rs8052489	0.85[AMR][1000 genomes]
rs8060867	0.95[CEU][hapmap];0.94[JPT][hapmap]
rs8061970	0.82[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]
rs8203	0.92[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs918721	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs951939	0.92[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs979789	0.86[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9921270	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap]
rs9923264	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9923336	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9925228	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs9927336	0.81[AMR][1000 genomes]
rs9927437	0.84[AMR][1000 genomes]
rs9930543	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9932415	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9933961	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9936903	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9937280	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9939455	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs9939471	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9939658	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9940142	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9940217	0.91[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes]
rs9940707	0.82[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4788809	ZNF23	cis	parietal	SCAN
rs4788809	B3GNT9	cis	parietal	SCAN
rs4788809	PHLPP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71615600-71616400	Flanking Active TSS	HepG2	liver
2	chr16:71615800-71617800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:71615800-71618400	Weak transcription	Liver	Liver
4	chr16:71615800-71619000	Weak transcription	A549	lung

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