Variant report

Variant	rs1035545
Chromosome Location	chr16:71697752-71697753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr16:71697641-71698058	T-47D	breast:	n/a	n/a
2	GATA3	chr16:71697624-71698070	MCF-7	breast:	n/a	n/a
3	GATA3	chr16:71697480-71698335	MCF-7	breast:	n/a	n/a
4	GATA3	chr16:71697681-71698107	T-47D	breast:	n/a	n/a
5	SIN3AK20	chr16:71697479-71698308	MCF-7	breast:	n/a	n/a
6	GATA3	chr16:71697606-71698090	MCF-7	breast:	n/a	n/a
7	ZNF217	chr16:71697740-71698110	MCF-7	breast:	n/a	n/a
8	NR2F2	chr16:71697663-71698136	MCF-7	breast:	n/a	n/a
9	GATA3	chr16:71697563-71698228	MCF-7	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71696881..71698945-chr16:71757287..71759170,2	MCF-7	breast:
2	chr16:71697444..71699494-chr16:71756866..71759011,2	MCF-7	breast:
3	chr16:71659983..71661516-chr16:71697596..71700523,2	MCF-7	breast:

No data

Variant related genes	Relation type
RNU6-208P	TF binding region
ENSG00000260593	Chromatin interaction
ENSG00000261513	Chromatin interaction
ENSG00000040199	Chromatin interaction
ENSG00000140832	Chromatin interaction

Extended variants
information (count: 159 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10500559	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1058747	1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10775326	0.95[ASN][1000 genomes]
rs11075889	0.82[EUR][1000 genomes]
rs11075891	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11075892	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11075895	0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs11075900	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11075902	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11539980	0.93[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11641873	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11643690	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11645467	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11646635	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11646748	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11647873	0.81[ASN][1000 genomes]
rs11648240	0.91[CEU][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11648674	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11859729	0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.82[ASN][1000 genomes]
rs11862798	0.91[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11865683	0.86[ASN][1000 genomes]
rs11866795	0.85[CHB][hapmap]
rs12051443	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12051449	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12051506	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12444484	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12447856	0.86[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12448226	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12597065	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12598902	0.95[CEU][hapmap];0.92[CHB][hapmap]
rs12920243	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12923644	0.88[ASN][1000 genomes]
rs12924258	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12925587	0.82[EUR][1000 genomes]
rs12926987	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12927320	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12928187	0.82[ASN][1000 genomes]
rs12930206	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12930418	0.84[ASN][1000 genomes]
rs12932850	0.93[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12935426	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13380425	0.87[ASN][1000 genomes]
rs1392483	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1392487	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1477386	0.87[CEU][hapmap]
rs1582589	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs172649	0.82[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap]
rs172650	0.87[CEU][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2032920	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2036337	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2036338	0.86[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2113222	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2270830	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2270831	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2270832	0.94[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2278031	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2303225	1.00[CEU][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2334879	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2334883	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2334884	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2335716	0.88[ASN][1000 genomes]
rs2432520	0.87[CEU][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2432524	0.91[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs28439683	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28582831	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28636800	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28704189	0.83[EUR][1000 genomes]
rs34161748	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34401601	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34734042	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34764568	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35173463	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3751817	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3752681	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3829537	0.91[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs3886515	0.87[ASN][1000 genomes]
rs3925658	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4444347	0.92[CHB][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs4788442	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788544	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4788546	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4788547	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4788549	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788551	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4788552	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4788554	0.89[EUR][1000 genomes]
rs4788558	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4788567	0.87[ASW][hapmap];0.91[TSI][hapmap]
rs4788808	0.82[CHD][hapmap]
rs4788809	0.91[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4788812	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4788814	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4788817	0.91[CEU][hapmap];0.80[MEX][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4788821	0.93[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4788826	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788827	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57997630	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60881203	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62053077	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62053078	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62053107	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62053108	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6499532	0.83[ASN][1000 genomes]
rs7185997	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7186717	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7187877	0.92[ASN][1000 genomes]
rs7188406	0.89[GIH][hapmap]
rs7191593	0.84[ASN][1000 genomes]
rs7196498	0.82[ASN][1000 genomes]
rs7201754	0.92[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.86[LWK][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs7202288	0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.82[ASN][1000 genomes]
rs7203168	0.82[ASN][1000 genomes]
rs7203216	0.82[ASN][1000 genomes]
rs7203231	0.92[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap]
rs7206039	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7404381	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8048057	0.86[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8048210	0.93[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8052489	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8052999	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8053070	0.88[ASN][1000 genomes]
rs8056823	0.85[ASN][1000 genomes]
rs8060867	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8061613	0.92[ASN][1000 genomes]
rs8061970	0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.82[ASN][1000 genomes]
rs8062441	0.85[EUR][1000 genomes]
rs8062477	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8063535	0.82[ASN][1000 genomes]
rs8203	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs904763	0.85[CHD][hapmap]
rs918721	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs951453	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs951939	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs979789	0.94[GIH][hapmap]
rs9921270	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9922054	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9923264	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9923336	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9925069	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9925228	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9927336	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9927437	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9930543	0.82[EUR][1000 genomes]
rs9931717	0.82[EUR][1000 genomes]
rs9932415	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9933961	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9936903	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9937280	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9939455	0.93[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9939471	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9939658	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9940142	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9940217	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9940707	0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap]
rs9940990	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv962218	chr16:71645202-71727606	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1035545	ZNF23	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71668000-71703000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr16:71671800-71704000	Weak transcription	Fetal Brain Male	brain
3	chr16:71672000-71741400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:71674800-71704600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:71675000-71724000	Weak transcription	Esophagus	oesophagus
6	chr16:71681200-71710800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:71681200-71716000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr16:71682800-71698000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:71683800-71704800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:71683800-71756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:71684000-71697800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:71684000-71704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:71685200-71741200	Weak transcription	Psoas Muscle	Psoas
14	chr16:71685400-71718800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr16:71685800-71726000	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr16:71686200-71705400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr16:71686800-71703000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr16:71686800-71717200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr16:71687000-71700200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr16:71687800-71725000	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr16:71688600-71703400	Weak transcription	Pancreas	Pancrea
22	chr16:71688600-71704000	Weak transcription	Gastric	stomach
23	chr16:71689000-71703200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr16:71689000-71710000	Weak transcription	Thymus	Thymus
25	chr16:71690600-71699400	Weak transcription	Brain Substantia Nigra	brain
26	chr16:71690600-71700200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr16:71690600-71701000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr16:71690600-71702800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr16:71690600-71703200	Weak transcription	Lung	lung
30	chr16:71690600-71703400	Weak transcription	Right Ventricle	heart
31	chr16:71690600-71706400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr16:71690600-71708800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr16:71690600-71709600	Weak transcription	Small Intestine	intestine
34	chr16:71690600-71733600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr16:71690600-71741200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr16:71690800-71699400	Weak transcription	Brain Hippocampus Middle	brain
37	chr16:71690800-71725600	Weak transcription	Fetal Thymus	thymus
38	chr16:71691200-71703800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr16:71692600-71699400	Weak transcription	A549	lung
40	chr16:71692800-71700000	Weak transcription	Colon Smooth Muscle	Colon
41	chr16:71692800-71701200	Weak transcription	Hela-S3	cervix
42	chr16:71692800-71703400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr16:71693000-71699400	Weak transcription	Fetal Lung	lung
44	chr16:71693000-71699400	Weak transcription	Dnd41	blood
45	chr16:71693000-71699600	Weak transcription	HUVEC	blood vessel
46	chr16:71693000-71700000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr16:71693000-71700400	Weak transcription	HSMMtube	muscle
48	chr16:71693000-71700600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr16:71693000-71701000	Weak transcription	Brain Angular Gyrus	brain
50	chr16:71693000-71702800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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