Variant report

Variant	rs9925069
Chromosome Location	chr16:71824171-71824172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71823251..71826852-chr16:71839928..71843333,4	K562	blood:
2	chr16:71823922..71825442-chr16:71825823..71828696,2	K562	blood:
3	chr16:71821888..71825986-chr16:71827605..71831800,6	MCF-7	breast:
4	chr16:71820044..71826852-chr16:71835906..71843775,16	K562	blood:
5	chr16:71823070..71825455-chr16:71841320..71842934,2	MCF-7	breast:
6	chr16:71822504..71826095-chr16:71827196..71830655,3	K562	blood:
7	chr16:71823170..71824685-chr16:71836781..71838672,2	K562	blood:
8	chr16:71818651..71820416-chr16:71822467..71824853,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10083757	0.92[ASN][1000 genomes]
rs10220961	0.83[ASN][1000 genomes]
rs1035545	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10459804	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10459805	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10500559	0.82[EUR][1000 genomes]
rs1058747	0.81[EUR][1000 genomes]
rs11075900	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11075902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11539980	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11640725	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11641873	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11645467	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11646635	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11646748	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11648674	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11866795	0.95[ASN][1000 genomes]
rs12051443	0.81[EUR][1000 genomes]
rs12051449	0.81[EUR][1000 genomes]
rs12051506	0.82[EUR][1000 genomes]
rs12149092	0.84[ASN][1000 genomes]
rs12149496	0.90[ASN][1000 genomes]
rs12149873	0.81[ASN][1000 genomes]
rs12444484	0.80[EUR][1000 genomes]
rs12447856	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12448226	0.85[EUR][1000 genomes]
rs12597065	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12597418	0.83[EUR][1000 genomes]
rs12598902	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12920243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12922859	0.83[ASN][1000 genomes]
rs12924258	0.86[EUR][1000 genomes]
rs12925587	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12926987	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12927320	0.81[EUR][1000 genomes]
rs12930206	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12932850	0.81[EUR][1000 genomes]
rs12935426	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1392483	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1392487	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2010428	0.84[ASN][1000 genomes]
rs2036337	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2036338	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2270829	0.85[ASN][1000 genomes]
rs2270830	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2270831	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2270832	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2278031	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2303224	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2303225	0.81[EUR][1000 genomes]
rs2334879	0.82[EUR][1000 genomes]
rs28439683	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28582831	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28636800	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28704189	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34158217	0.87[ASN][1000 genomes]
rs34161748	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34401601	0.86[EUR][1000 genomes]
rs34734042	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34764568	0.82[EUR][1000 genomes]
rs35173463	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3751817	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3752681	0.81[EUR][1000 genomes]
rs3848389	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3925658	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4788442	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4788549	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4788551	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788552	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788554	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4788558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4788821	0.82[EUR][1000 genomes]
rs4788826	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4788827	0.86[EUR][1000 genomes]
rs57997630	0.82[EUR][1000 genomes]
rs60881203	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62053107	0.81[EUR][1000 genomes]
rs62053108	0.83[EUR][1000 genomes]
rs6499539	0.86[ASN][1000 genomes]
rs7185997	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7192956	0.86[ASN][1000 genomes]
rs7201228	0.86[ASN][1000 genomes]
rs7203231	0.86[ASN][1000 genomes]
rs7404381	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7501228	0.86[ASN][1000 genomes]
rs8048057	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8048210	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8051760	0.94[ASN][1000 genomes]
rs8052489	0.85[EUR][1000 genomes]
rs8052999	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8060867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8062441	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8062477	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8203	0.81[EUR][1000 genomes]
rs918721	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs951453	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs951939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9921270	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9922054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9925228	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9927336	0.85[EUR][1000 genomes]
rs9927437	0.85[EUR][1000 genomes]
rs9931717	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9936903	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9937280	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9939455	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9940217	0.86[EUR][1000 genomes]
rs9940707	0.83[ASN][1000 genomes]
rs9940990	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71779600-71841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71793200-71830400	Weak transcription	Fetal Heart	heart
3	chr16:71808000-71829800	Weak transcription	NHLF	lung
4	chr16:71808400-71828800	Weak transcription	HSMMtube	muscle
5	chr16:71811800-71826600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr16:71812600-71825800	Weak transcription	Right Atrium	heart
7	chr16:71816000-71840400	Weak transcription	Fetal Kidney	kidney
8	chr16:71819800-71824400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:71821400-71824800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:71821400-71826200	Weak transcription	Fetal Intestine Small	intestine
11	chr16:71821400-71840000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr16:71823200-71824800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr16:71823200-71824800	Weak transcription	Brain Hippocampus Middle	brain
14	chr16:71823200-71825400	Weak transcription	Primary T cells from cord blood	blood
15	chr16:71823200-71826000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr16:71823200-71826200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:71823200-71829000	Weak transcription	Colon Smooth Muscle	Colon
18	chr16:71823200-71829800	Weak transcription	Psoas Muscle	Psoas
19	chr16:71823200-71830000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr16:71823200-71832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr16:71823200-71835200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr16:71823200-71840400	Weak transcription	HUVEC	blood vessel
23	chr16:71823200-71841400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr16:71823400-71824400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr16:71823400-71824400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr16:71823400-71824400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:71823400-71824400	Weak transcription	Adipose Nuclei	Adipose
28	chr16:71823400-71824400	Weak transcription	Liver	Liver
29	chr16:71823400-71824400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr16:71823400-71824400	Weak transcription	Stomach Mucosa	stomach
31	chr16:71823400-71824800	Weak transcription	Left Ventricle	heart
32	chr16:71823400-71824800	Weak transcription	Ovary	ovary
33	chr16:71823400-71824800	Weak transcription	Spleen	Spleen
34	chr16:71823400-71825400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr16:71823400-71825400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr16:71823400-71825400	Weak transcription	Primary B cells from cord blood	blood
37	chr16:71823400-71825800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr16:71823400-71825800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr16:71823400-71825800	Weak transcription	NHDF-Ad	bronchial
40	chr16:71823400-71826000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr16:71823400-71826000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr16:71823400-71826000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr16:71823400-71826000	Weak transcription	Thymus	Thymus
44	chr16:71823400-71826400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr16:71823400-71826400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr16:71823400-71826400	Weak transcription	Fetal Stomach	stomach
47	chr16:71823400-71826400	Weak transcription	Right Ventricle	heart
48	chr16:71823400-71826600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr16:71823400-71826600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr16:71823400-71826800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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