Variant report

Variant	rs9939658
Chromosome Location	chr16:71639225-71639226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1035545	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10500559	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1058747	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11075889	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11075890	0.87[ASN][1000 genomes]
rs11075891	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11075892	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11539980	0.80[AMR][1000 genomes]
rs11643690	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11648240	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11648674	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11862798	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12051443	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12051449	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12051506	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12444484	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12597065	0.82[AMR][1000 genomes]
rs12924258	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12926987	0.81[AMR][1000 genomes]
rs12927320	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12932850	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12935426	0.80[AMR][1000 genomes]
rs1392487	0.80[AMR][1000 genomes]
rs1477386	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1582589	0.83[AMR][1000 genomes]
rs172649	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs172650	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032920	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2113222	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2278031	0.81[AMR][1000 genomes]
rs2303224	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2303225	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2334879	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2334883	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2334884	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2432519	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2432520	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2432524	0.84[EUR][1000 genomes]
rs28439683	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28582831	0.81[AMR][1000 genomes]
rs28636800	0.81[AMR][1000 genomes]
rs310331	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34161748	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34734042	0.81[AMR][1000 genomes]
rs34764568	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35939203	0.84[ASN][1000 genomes]
rs3751817	0.80[AMR][1000 genomes]
rs3752681	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3829537	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3925658	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4788544	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4788546	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4788547	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4788549	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4788551	0.80[AMR][1000 genomes]
rs4788552	0.80[AMR][1000 genomes]
rs4788809	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788812	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4788814	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4788817	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4788821	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4788826	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4788827	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57997630	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60881203	0.80[AMR][1000 genomes]
rs62053077	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62053078	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62053107	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62053108	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7186717	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7188406	0.89[ASN][1000 genomes]
rs7195840	0.83[ASN][1000 genomes]
rs7206039	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8048057	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8048210	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8052489	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8203	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs918721	0.80[AMR][1000 genomes]
rs9921270	0.80[AMR][1000 genomes]
rs9923264	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9923336	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9925228	0.80[AMR][1000 genomes]
rs9927336	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9927437	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9930543	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9932415	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9933961	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9936903	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9937280	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9939471	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9940142	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9940217	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1063338	chr16:71612346-71752968	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3430225	chr16:71633500-71661205	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3339539	chr16:71635901-71639399	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71635200-71640600	Weak transcription	HepG2	liver

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