Variant report

Variant	rs3900777
Chromosome Location	chr9:13524951-13524952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1122741	0.81[AFR][1000 genomes]
rs11793104	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11794300	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3900776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66990936	0.92[EUR][1000 genomes]
rs72708354	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72708358	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708361	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72708366	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72708371	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72708381	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72708382	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708385	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708386	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708389	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7857349	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13520600-13529200	Weak transcription	NHEK	skin
3	chr9:13522600-13526000	Weak transcription	Ovary	ovary
4	chr9:13522600-13526200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:13522600-13529600	Weak transcription	HUVEC	blood vessel
6	chr9:13524600-13529400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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