Variant report

Variant	rs72708386
Chromosome Location	chr9:13529551-13529552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11793104	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11794300	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34167442	0.84[EUR][1000 genomes]
rs3900776	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3900777	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66990936	0.89[EUR][1000 genomes]
rs72708349	0.86[EUR][1000 genomes]
rs72708354	0.88[EUR][1000 genomes]
rs72708355	0.83[EUR][1000 genomes]
rs72708358	0.96[EUR][1000 genomes]
rs72708361	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708366	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72708371	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72708381	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72708382	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72708389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7857349	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13522600-13529600	Weak transcription	HUVEC	blood vessel
2	chr9:13526800-13529600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:13527800-13532200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:13528800-13536000	Weak transcription	Pancreas	Pancrea
5	chr9:13529200-13530400	Enhancers	HMEC	breast
6	chr9:13529200-13530400	Enhancers	NHEK	skin
7	chr9:13529200-13531000	Enhancers	Fetal Muscle Leg	muscle
8	chr9:13529400-13529600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:13529400-13530200	Enhancers	HSMM	muscle
10	chr9:13529400-13530400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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