Variant report

Variant	rs72708366
Chromosome Location	chr9:13522373-13522374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11793104	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11794300	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3900776	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3900777	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66990936	0.85[EUR][1000 genomes]
rs72708358	0.91[EUR][1000 genomes]
rs72708361	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708371	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72708381	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72708382	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72708385	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72708386	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72708389	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892585	chr9:13508282-13621142	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv466259	chr9:13510394-13593125	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613619	chr9:13510394-13593125	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13493000-13526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:13520000-13522600	Enhancers	HUVEC	blood vessel
3	chr9:13520200-13524400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:13520600-13529200	Weak transcription	NHEK	skin
5	chr9:13521400-13522400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:13521400-13522400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:13521800-13522600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:13522000-13522600	Enhancers	Left Ventricle	heart
9	chr9:13522000-13522600	Enhancers	Ovary	ovary
10	chr9:13522000-13524000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:13522000-13524000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:13522200-13522600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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