Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1011308	0.92[ASN][1000 genomes]
rs10868872	0.92[ASN][1000 genomes]
rs10868875	0.98[ASN][1000 genomes]
rs11142539	0.86[ASN][1000 genomes]
rs12344255	0.98[ASN][1000 genomes]
rs12348503	0.98[ASN][1000 genomes]
rs12352329	1.00[ASN][1000 genomes]
rs12376453	0.95[ASN][1000 genomes]
rs12378618	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12380623	0.92[ASN][1000 genomes]
rs17055479	0.86[ASN][1000 genomes]
rs4131069	0.86[ASN][1000 genomes]
rs4540466	0.92[ASN][1000 genomes]
rs4744613	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6560148	0.95[ASN][1000 genomes]
rs7860003	0.95[ASN][1000 genomes]
rs7860377	0.94[ASN][1000 genomes]
rs7860736	0.94[ASN][1000 genomes]
rs7874138	0.92[ASN][1000 genomes]
rs7875827	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs879857	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	nsv6556	chr9:73304158-73363098	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv999856	chr9:73313422-73355386	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73309000-73317200	Weak transcription	Fetal Kidney	kidney
2	chr9:73309800-73316400	Weak transcription	Fetal Brain Male	brain
3	chr9:73314600-73316600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:73315400-73316800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:73315600-73316400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73315600-73316800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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