Variant report

Variant	rs879857
Chromosome Location	chr9:73389934-73389935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1011308	0.83[ASN][1000 genomes]
rs10868872	0.83[ASN][1000 genomes]
rs10868875	0.89[ASN][1000 genomes]
rs12344255	0.89[ASN][1000 genomes]
rs12348503	0.89[ASN][1000 genomes]
rs12352329	0.91[ASN][1000 genomes]
rs12376453	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12378618	0.89[ASN][1000 genomes]
rs12380623	0.83[ASN][1000 genomes]
rs3908571	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4540466	0.83[ASN][1000 genomes]
rs4744613	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560148	0.86[ASN][1000 genomes]
rs7860003	0.86[ASN][1000 genomes]
rs7860377	0.85[ASN][1000 genomes]
rs7860736	0.85[ASN][1000 genomes]
rs7874138	0.83[ASN][1000 genomes]
rs7875827	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73369200-73390200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73375600-73398400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:73389000-73392400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:73389400-73392000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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