Variant report

Variant	rs3910047
Chromosome Location	chr4:149210677-149210678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs11099686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11099687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12498662	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17484245	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17581605	0.85[CHB][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2115800	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3752701	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3846322	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs3846327	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3846329	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3925570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835133	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs4835134	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57929469	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6535599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6855341	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs72728492	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7674857	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1028105	chr4:149199913-149284620	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537297	chr4:149199913-149284620	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149194400-149216400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr4:149204800-149210800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:149205600-149211000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:149206000-149211000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:149206000-149211000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:149206400-149210800	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:149206400-149216600	Weak transcription	Right Atrium	heart
8	chr4:149206400-149231600	Weak transcription	Right Ventricle	heart
9	chr4:149207000-149211600	Enhancers	Fetal Heart	heart
10	chr4:149207200-149213600	Weak transcription	Liver	Liver
11	chr4:149208600-149211000	Weak transcription	Brain Anterior Caudate	brain
12	chr4:149208600-149211000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:149208600-149211000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr4:149208600-149214000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:149208800-149212000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:149209600-149211200	Enhancers	Colon Smooth Muscle	Colon
17	chr4:149209600-149211200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr4:149209600-149211400	Enhancers	Psoas Muscle	Psoas
19	chr4:149209600-149211600	Enhancers	Stomach Mucosa	stomach
20	chr4:149209800-149211000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:149209800-149211000	Enhancers	Duodenum Mucosa	Duodenum
22	chr4:149209800-149214600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:149209800-149216600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr4:149210000-149211000	Weak transcription	Left Ventricle	heart
25	chr4:149210000-149214800	Weak transcription	Ovary	ovary
26	chr4:149210000-149216600	Weak transcription	Pancreas	Pancrea
27	chr4:149210000-149220600	Weak transcription	Gastric	stomach
28	chr4:149210600-149211200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:149210600-149211200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr4:149210600-149211200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr4:149210600-149211200	Enhancers	Small Intestine	intestine

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