Variant report

Variant	rs4835133
Chromosome Location	chr4:149175818-149175819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149172838..149174684-chr4:149174942..149176809,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10519952	0.91[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11099686	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11099687	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs12498662	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17024541	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17484245	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17581605	0.81[CHB][hapmap]
rs3752701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846322	0.91[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846329	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs3910047	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs3925570	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs59896839	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61349394	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535599	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs6855341	0.92[ASW][hapmap];0.88[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72491781	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4835133	OTUD4	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:149173200-149176200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:149173600-149176600	Weak transcription	Fetal Kidney	kidney
7	chr4:149174400-149176800	Enhancers	Liver	Liver
8	chr4:149174400-149176800	Enhancers	Stomach Mucosa	stomach
9	chr4:149174800-149176400	Enhancers	Fetal Intestine Small	intestine
10	chr4:149174800-149176400	Enhancers	Left Ventricle	heart
11	chr4:149174800-149176400	Enhancers	Pancreas	Pancrea
12	chr4:149175200-149176400	Enhancers	Fetal Intestine Large	intestine
13	chr4:149175200-149177200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:149175200-149179600	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:149175400-149176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:149175400-149176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:149175400-149177400	Enhancers	HUVEC	blood vessel
18	chr4:149175600-149177200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:149175800-149176200	Weak transcription	Right Atrium	heart
22	chr4:149175800-149179400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:149175800-149179600	Weak transcription	Right Ventricle	heart

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