Variant report

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10519952	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12498662	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17024541	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17484245	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3752701	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846322	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835133	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61349394	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855341	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72491781	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:149175200-149179600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:149175800-149179400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:149175800-149179600	Weak transcription	Right Ventricle	heart
10	chr4:149176400-149179200	Weak transcription	Left Ventricle	heart
11	chr4:149176400-149182400	Weak transcription	Pancreas	Pancrea
12	chr4:149176400-149186400	Weak transcription	Fetal Intestine Small	intestine
13	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
14	chr4:149176800-149179200	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:149177000-149179800	Weak transcription	Fetal Kidney	kidney
16	chr4:149177200-149179400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:149177200-149184400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
19	chr4:149177400-149184600	Weak transcription	HUVEC	blood vessel
20	chr4:149177400-149184800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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