Variant report

Variant	rs17484245
Chromosome Location	chr4:149180975-149180976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10519952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11099686	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11099687	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs12498662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024541	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17581605	0.82[CHB][hapmap]
rs3752701	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3846322	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3846329	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs3910047	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3925570	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4835133	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59896839	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61349394	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6535599	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs6855341	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72491781	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:149175600-149182400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:149175600-149195000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:149176400-149182400	Weak transcription	Pancreas	Pancrea
5	chr4:149176400-149186400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:149176400-149188400	Weak transcription	Right Atrium	heart
7	chr4:149177200-149184400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:149177200-149194800	Weak transcription	Small Intestine	intestine
9	chr4:149177400-149184600	Weak transcription	HUVEC	blood vessel
10	chr4:149177400-149184800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:149179400-149181200	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr4:149179400-149181400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:149179600-149181400	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:149179800-149182400	Weak transcription	Esophagus	oesophagus
15	chr4:149180000-149182200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:149180000-149182400	Weak transcription	Lung	lung
17	chr4:149180000-149194600	Weak transcription	Left Ventricle	heart
18	chr4:149180800-149182400	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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