Variant report

Variant	rs3917706
Chromosome Location	chr1:169585428-169585429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10919204	1.00[AFR][1000 genomes]
rs10919207	1.00[AFR][1000 genomes]
rs10919219	1.00[AFR][1000 genomes]
rs11487513	1.00[AFR][1000 genomes]
rs12067152	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12076747	1.00[AFR][1000 genomes]
rs12081319	1.00[AFR][1000 genomes]
rs12126695	1.00[AFR][1000 genomes]
rs12131631	1.00[AFR][1000 genomes]
rs1800015	1.00[YRI][hapmap]
rs1800016	1.00[YRI][hapmap]
rs1800808	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1805193	1.00[YRI][hapmap]
rs2235304	1.00[AFR][1000 genomes]
rs28409897	1.00[AFR][1000 genomes]
rs3917392	1.00[YRI][hapmap]
rs3917410	1.00[YRI][hapmap]
rs3917411	1.00[YRI][hapmap]
rs3917425	1.00[YRI][hapmap]
rs3917427	1.00[YRI][hapmap]
rs3917452	1.00[YRI][hapmap]
rs3917453	1.00[YRI][hapmap]
rs3917657	1.00[AFR][1000 genomes]
rs3917675	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3917681	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3917702	1.00[AFR][1000 genomes]
rs3917709	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3917729	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4987299	1.00[YRI][hapmap]
rs4987323	1.00[YRI][hapmap]
rs4987324	1.00[YRI][hapmap]
rs4987363	1.00[YRI][hapmap]
rs5361	1.00[YRI][hapmap]
rs5362	1.00[YRI][hapmap]
rs5363	1.00[YRI][hapmap]
rs5367	1.00[YRI][hapmap]
rs58647626	1.00[AFR][1000 genomes]
rs60035985	1.00[AFR][1000 genomes]
rs909628	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169579800-169587600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:169581600-169587600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:169582000-169585800	Enhancers	Primary T cells from cord blood	blood
4	chr1:169582400-169586200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:169584200-169592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:169585200-169585600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:169585400-169585600	Enhancers	Placenta	Placenta
9	chr1:169585400-169585800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:169585400-169592800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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