Variant report

Variant	rs3917675
Chromosome Location	chr1:169592512-169592513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1011266	0.82[ASN][1000 genomes]
rs10919204	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10919207	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10919208	0.85[ASN][1000 genomes]
rs10919214	0.85[ASN][1000 genomes]
rs10919216	0.85[ASN][1000 genomes]
rs10919219	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11487513	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12067152	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076747	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12081319	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12087424	0.91[ASN][1000 genomes]
rs12116948	0.85[ASN][1000 genomes]
rs12116974	0.86[ASN][1000 genomes]
rs12123695	0.91[ASN][1000 genomes]
rs12126695	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12131631	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12140128	0.86[ASN][1000 genomes]
rs1569474	0.86[ASN][1000 genomes]
rs1569476	0.90[ASN][1000 genomes]
rs1800015	1.00[YRI][hapmap]
rs1800016	1.00[YRI][hapmap]
rs1800805	0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs1800808	0.84[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1805193	1.00[YRI][hapmap]
rs2235302	0.84[ASN][1000 genomes]
rs2235304	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2236868	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs28409897	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3917392	1.00[YRI][hapmap]
rs3917410	1.00[YRI][hapmap]
rs3917411	1.00[YRI][hapmap]
rs3917425	1.00[YRI][hapmap]
rs3917427	1.00[YRI][hapmap]
rs3917452	1.00[YRI][hapmap]
rs3917453	1.00[YRI][hapmap]
rs3917655	0.94[ASN][1000 genomes]
rs3917657	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3917681	0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3917682	0.86[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs3917702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917706	1.00[AFR][1000 genomes]
rs3917709	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3917729	0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4987299	1.00[YRI][hapmap]
rs4987323	1.00[YRI][hapmap]
rs4987324	1.00[YRI][hapmap]
rs4987363	1.00[YRI][hapmap]
rs5361	1.00[YRI][hapmap]
rs5362	1.00[YRI][hapmap]
rs5363	1.00[YRI][hapmap]
rs5367	1.00[YRI][hapmap]
rs58647626	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs60035985	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6131	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs66920835	0.90[ASN][1000 genomes]
rs909628	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3419871	chr1:169588028-169592726	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3917675	METTL18	cis	Artery Tibial	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169584200-169592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:169585400-169592800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:169590600-169593600	Enhancers	Dnd41	blood
5	chr1:169590800-169595200	Weak transcription	Lung	lung
6	chr1:169591600-169599600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:169592200-169594200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:169592200-169594600	Enhancers	HUVEC	blood vessel
9	chr1:169592200-169594800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:169592200-169595600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:169592200-169597600	Enhancers	Primary T cells from cord blood	blood
12	chr1:169592200-169598400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:169592200-169599400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr1:169592200-169599600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr1:169592200-169599800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:169592400-169592600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:169592400-169593200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:169592400-169593200	Enhancers	Thymus	Thymus
19	chr1:169592400-169593600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:169592400-169595000	Enhancers	Fetal Thymus	thymus
21	chr1:169592400-169596000	Enhancers	Primary T cells fromperipheralblood	blood

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