Variant report

Variant	rs3917682
Chromosome Location	chr1:169591548-169591549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1011266	0.83[ASN][1000 genomes]
rs10919204	0.92[ASN][1000 genomes]
rs10919207	0.92[ASN][1000 genomes]
rs10919208	0.86[ASN][1000 genomes]
rs10919214	0.86[ASN][1000 genomes]
rs10919216	0.88[ASN][1000 genomes]
rs10919219	0.92[ASN][1000 genomes]
rs11487513	0.92[ASN][1000 genomes]
rs12067152	0.84[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12076747	0.92[ASN][1000 genomes]
rs12081319	0.92[ASN][1000 genomes]
rs12087424	0.92[ASN][1000 genomes]
rs12116948	0.88[ASN][1000 genomes]
rs12116974	0.87[ASN][1000 genomes]
rs12123695	0.92[ASN][1000 genomes]
rs12126695	0.90[ASN][1000 genomes]
rs12131631	0.92[ASN][1000 genomes]
rs12140128	0.87[ASN][1000 genomes]
rs1569474	0.87[ASN][1000 genomes]
rs1569476	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1800805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1800808	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs2235302	0.88[ASN][1000 genomes]
rs2236868	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs28409897	0.92[ASN][1000 genomes]
rs3917655	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3917657	0.99[ASN][1000 genomes]
rs3917675	0.86[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs3917681	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3917702	0.97[ASN][1000 genomes]
rs3917709	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3917729	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3917731	0.85[AFR][1000 genomes]
rs3917733	0.82[AFR][1000 genomes]
rs58647626	0.92[ASN][1000 genomes]
rs60035985	0.92[ASN][1000 genomes]
rs6131	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs66920835	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3419871	chr1:169588028-169592726	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169584200-169592600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr1:169585200-169593400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:169585400-169592800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:169585600-169592200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:169588400-169591600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:169588600-169592200	Weak transcription	HUVEC	blood vessel
7	chr1:169588800-169592200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:169590600-169593600	Enhancers	Dnd41	blood
9	chr1:169590800-169595200	Weak transcription	Lung	lung
10	chr1:169591000-169592200	Weak transcription	Primary T cells from cord blood	blood

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