Variant report

Variant	rs10919208
Chromosome Location	chr1:169625912-169625913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1011266	0.85[ASN][1000 genomes]
rs10919204	0.94[ASN][1000 genomes]
rs10919207	0.94[ASN][1000 genomes]
rs10919214	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10919216	0.98[ASN][1000 genomes]
rs10919219	0.94[ASN][1000 genomes]
rs11487513	0.94[ASN][1000 genomes]
rs12067152	0.85[ASN][1000 genomes]
rs12076747	0.94[ASN][1000 genomes]
rs12081319	0.94[ASN][1000 genomes]
rs12087424	0.94[ASN][1000 genomes]
rs12116948	0.98[ASN][1000 genomes]
rs12116974	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12123695	0.94[ASN][1000 genomes]
rs12126695	0.91[ASN][1000 genomes]
rs12131631	0.94[ASN][1000 genomes]
rs12140128	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12410141	0.89[AFR][1000 genomes]
rs12733041	0.91[AFR][1000 genomes]
rs1569472	0.95[AFR][1000 genomes]
rs1569474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569475	0.95[AFR][1000 genomes]
rs1569476	0.92[ASN][1000 genomes]
rs1800805	0.90[ASN][1000 genomes]
rs1800808	0.91[ASN][1000 genomes]
rs2236868	0.80[ASN][1000 genomes]
rs28409897	0.94[ASN][1000 genomes]
rs34126060	0.91[AFR][1000 genomes]
rs34435738	0.92[AFR][1000 genomes]
rs35880454	0.90[AFR][1000 genomes]
rs3917655	0.88[ASN][1000 genomes]
rs3917657	0.87[ASN][1000 genomes]
rs3917675	0.85[ASN][1000 genomes]
rs3917681	0.87[ASN][1000 genomes]
rs3917682	0.86[ASN][1000 genomes]
rs3917702	0.85[ASN][1000 genomes]
rs3917709	0.83[ASN][1000 genomes]
rs3917729	0.81[ASN][1000 genomes]
rs56028024	0.88[AFR][1000 genomes]
rs58647626	0.94[ASN][1000 genomes]
rs60035985	0.94[ASN][1000 genomes]
rs66920835	0.92[ASN][1000 genomes]
rs71635628	0.92[AFR][1000 genomes]
rs71635629	0.92[AFR][1000 genomes]
rs7535804	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10919208	METTL18	cis	Esophagus Muscularis	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169618600-169633800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:169619400-169626200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:169619600-169631400	Weak transcription	Primary T cells from cord blood	blood
4	chr1:169620200-169629400	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:169620600-169626000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:169623400-169628800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:169624200-169628000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:169625000-169626200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:169625000-169628400	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:169625200-169626000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr1:169625200-169626200	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr1:169625200-169626400	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:169625200-169626600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:169625200-169626600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
15	chr1:169625400-169626000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:169625400-169626200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr1:169625400-169626600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:169625400-169626800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr1:169625400-169627600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr1:169625600-169626400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr1:169625600-169626400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:169625800-169626200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:169625800-169626200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr1:169625800-169626400	Enhancers	Placenta	Placenta

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