Variant report

Variant	rs10919204
Chromosome Location	chr1:169619330-169619331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169614149..169618118-chr1:169618692..169623523,5	K562	blood:
2	chr1:169614149..169617850-chr1:169618797..169622086,4	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1011266	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10489183	0.87[AMR][1000 genomes]
rs10919207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919208	0.94[ASN][1000 genomes]
rs10919214	0.93[ASN][1000 genomes]
rs10919216	0.94[ASN][1000 genomes]
rs10919219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11487513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12067152	0.84[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12076747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081319	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087424	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116948	0.94[ASN][1000 genomes]
rs12116974	0.95[ASN][1000 genomes]
rs12123695	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12131631	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140128	0.95[ASN][1000 genomes]
rs1569474	0.95[ASN][1000 genomes]
rs1569476	0.99[ASN][1000 genomes]
rs1800015	1.00[YRI][hapmap]
rs1800016	1.00[YRI][hapmap]
rs1800805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1800808	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805193	1.00[YRI][hapmap]
rs2235302	0.80[ASN][1000 genomes]
rs2235304	1.00[AFR][1000 genomes]
rs2236868	0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs28409897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917392	1.00[YRI][hapmap]
rs3917410	1.00[YRI][hapmap]
rs3917411	1.00[YRI][hapmap]
rs3917425	1.00[YRI][hapmap]
rs3917427	1.00[YRI][hapmap]
rs3917452	1.00[YRI][hapmap]
rs3917453	1.00[YRI][hapmap]
rs3917655	0.94[ASN][1000 genomes]
rs3917657	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3917675	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3917681	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3917682	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs3917702	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3917706	1.00[AFR][1000 genomes]
rs3917709	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3917729	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4987299	1.00[YRI][hapmap]
rs4987323	1.00[YRI][hapmap]
rs4987324	1.00[YRI][hapmap]
rs4987363	1.00[YRI][hapmap]
rs5361	1.00[YRI][hapmap]
rs5362	1.00[YRI][hapmap]
rs5363	1.00[YRI][hapmap]
rs5367	1.00[YRI][hapmap]
rs58647626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60035985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs66920835	0.99[ASN][1000 genomes]
rs909628	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10919204	METTL18	cis	Artery Aorta	GTEx
rs10919204	METTL18	cis	Artery Tibial	GTEx
rs10919204	METTL18	cis	Muscle Skeletal	GTEx
rs10919204	METTL18	cis	Nerve Tibial	GTEx
rs10919204	C1orf156	cis	uninvolved skin	skin_eQTL
rs10919204	METTL18	cis	Esophagus Muscularis	GTEx
rs10919204	METTL18	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169616600-169619600	Enhancers	Primary T cells from cord blood	blood
2	chr1:169616800-169619600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr1:169616800-169619800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:169616800-169619800	Enhancers	Dnd41	blood
5	chr1:169616800-169620000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:169616800-169620000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:169616800-169620000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:169617000-169620600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:169617400-169619400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:169617400-169619800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:169617400-169620000	Enhancers	Thymus	Thymus
12	chr1:169617800-169619600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:169617800-169620000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:169618600-169620000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr1:169618600-169633800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:169619000-169619400	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:169619000-169620800	Enhancers	Brain Substantia Nigra	brain
18	chr1:169619200-169620800	Enhancers	Brain Inferior Temporal Lobe	brain

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