Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1011266	0.85[ASN][1000 genomes]
rs10919204	0.94[ASN][1000 genomes]
rs10919207	0.94[ASN][1000 genomes]
rs10919208	0.88[ASN][1000 genomes]
rs10919214	0.88[ASN][1000 genomes]
rs10919216	0.90[ASN][1000 genomes]
rs10919219	0.94[ASN][1000 genomes]
rs11487513	0.94[ASN][1000 genomes]
rs12067152	0.94[ASN][1000 genomes]
rs12076747	0.94[ASN][1000 genomes]
rs12081319	0.94[ASN][1000 genomes]
rs12087424	0.94[ASN][1000 genomes]
rs12116948	0.90[ASN][1000 genomes]
rs12116974	0.89[ASN][1000 genomes]
rs12123695	0.94[ASN][1000 genomes]
rs12126695	0.92[ASN][1000 genomes]
rs12131631	0.94[ASN][1000 genomes]
rs12140128	0.89[ASN][1000 genomes]
rs1569474	0.89[ASN][1000 genomes]
rs1569476	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1800805	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1800808	0.97[ASN][1000 genomes]
rs2235302	0.86[ASN][1000 genomes]
rs2236868	0.91[ASN][1000 genomes]
rs28409897	0.94[ASN][1000 genomes]
rs3917657	0.97[ASN][1000 genomes]
rs3917675	0.94[ASN][1000 genomes]
rs3917681	0.97[ASN][1000 genomes]
rs3917682	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3917702	0.94[ASN][1000 genomes]
rs3917709	0.92[ASN][1000 genomes]
rs3917729	0.90[ASN][1000 genomes]
rs3917731	0.82[AFR][1000 genomes]
rs58647626	0.94[ASN][1000 genomes]
rs60035985	0.94[ASN][1000 genomes]
rs6131	0.86[ASN][1000 genomes]
rs66920835	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169591600-169599600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:169592200-169599400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:169592200-169599600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:169592200-169599800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:169594400-169599400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:169594600-169599000	Weak transcription	HUVEC	blood vessel
7	chr1:169596800-169599600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:169597200-169599600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:169598000-169600600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:169598200-169599800	Enhancers	Primary T cells from cord blood	blood
11	chr1:169598400-169599200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr1:169598400-169599200	Weak transcription	Fetal Thymus	thymus
13	chr1:169598400-169602200	Weak transcription	Dnd41	blood
14	chr1:169598600-169599000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr1:169598800-169599400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr1:169598800-169599600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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