Variant report

Variant	rs34435738
Chromosome Location	chr1:169635384-169635385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10919208	0.92[AFR][1000 genomes]
rs10919214	0.92[AFR][1000 genomes]
rs12116974	0.84[AFR][1000 genomes]
rs12140128	0.91[AFR][1000 genomes]
rs12410141	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737587	0.85[EUR][1000 genomes]
rs1569472	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569474	0.87[AFR][1000 genomes]
rs1569475	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34126060	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880454	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979431	0.83[ASN][1000 genomes]
rs56028024	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71635624	0.88[EUR][1000 genomes]
rs71635628	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71635629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535600	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7535804	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169626800-169636800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:169629200-169636200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:169629800-169636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:169631800-169636000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:169631800-169636800	Weak transcription	Primary T cells from cord blood	blood
6	chr1:169632000-169635800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:169632000-169636000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:169632000-169636200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:169632000-169636200	Weak transcription	Dnd41	blood
10	chr1:169632200-169636000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:169632200-169636200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr1:169632200-169636200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:169632600-169636200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:169632800-169636000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:169633800-169636600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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