Variant report

Variant	rs71635624
Chromosome Location	chr1:169601045-169601046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12410141	0.84[EUR][1000 genomes]
rs12733041	0.88[EUR][1000 genomes]
rs12737587	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1569472	0.92[EUR][1000 genomes]
rs1569475	0.92[EUR][1000 genomes]
rs34126060	0.88[EUR][1000 genomes]
rs34435738	0.88[EUR][1000 genomes]
rs35880454	0.96[EUR][1000 genomes]
rs56028024	0.82[EUR][1000 genomes]
rs71635628	0.92[EUR][1000 genomes]
rs71635629	0.88[EUR][1000 genomes]
rs7535600	0.84[EUR][1000 genomes]
rs7535804	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169598400-169602200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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