Variant report

Variant	rs56028024
Chromosome Location	chr1:169640831-169640832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10919208	0.88[AFR][1000 genomes]
rs10919214	0.84[AFR][1000 genomes]
rs12116974	0.85[AFR][1000 genomes]
rs12140128	0.87[AFR][1000 genomes]
rs12410141	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12733041	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12737587	0.80[EUR][1000 genomes]
rs1569472	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569474	0.89[AFR][1000 genomes]
rs1569475	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34126060	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34435738	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35880454	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979431	0.83[ASN][1000 genomes]
rs71635624	0.82[EUR][1000 genomes]
rs71635628	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71635629	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535600	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7535804	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169637600-169645200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:169638200-169645400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:169638400-169641400	Enhancers	Primary T cells from cord blood	blood
4	chr1:169639600-169641600	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:169639800-169641000	Enhancers	Primary B cells from cord blood	blood
6	chr1:169639800-169641000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:169639800-169641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:169639800-169641400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:169639800-169641600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr1:169639800-169641600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:169639800-169641600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:169639800-169641800	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:169639800-169641800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr1:169639800-169642000	Enhancers	Dnd41	blood
15	chr1:169640000-169641400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:169640000-169641400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:169640000-169641600	Enhancers	HUVEC	blood vessel
18	chr1:169640000-169641800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:169640400-169641600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr1:169640400-169645200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:169640400-169645200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:169640800-169641000	Enhancers	Fetal Thymus	thymus
23	chr1:169640800-169645000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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