Variant report

Variant	rs3922731
Chromosome Location	chr3:142202636-142202637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10935464	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11711164	0.93[ASN][1000 genomes]
rs11711179	0.90[ASN][1000 genomes]
rs11714244	0.80[ASN][1000 genomes]
rs11714528	0.80[ASN][1000 genomes]
rs11719737	0.93[ASN][1000 genomes]
rs11720007	0.80[ASN][1000 genomes]
rs11720762	0.80[ASN][1000 genomes]
rs2229032	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2306700	0.80[ASN][1000 genomes]
rs28365824	0.88[EUR][1000 genomes]
rs55687115	0.80[ASN][1000 genomes]
rs55994893	0.89[EUR][1000 genomes]
rs56088529	0.80[ASN][1000 genomes]
rs56397702	0.89[EUR][1000 genomes]
rs60001529	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66597875	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73228757	0.82[EUR][1000 genomes]
rs73228758	0.82[EUR][1000 genomes]
rs73238185	0.80[ASN][1000 genomes]
rs73238186	0.80[ASN][1000 genomes]
rs73238187	0.80[ASN][1000 genomes]
rs73238195	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73238200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73238201	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73238202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240305	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73240309	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73240310	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73240314	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73240316	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73240318	0.80[EUR][1000 genomes]
rs73240323	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73240328	0.88[EUR][1000 genomes]
rs7633870	0.80[ASN][1000 genomes]
rs9858204	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv523945	chr3:141933649-142219542	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv877558	chr3:142123841-142331360	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv877559	chr3:142132749-142331360	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv877561	chr3:142152925-142331360	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv528954	chr3:142164017-142219542	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142167400-142234600	Weak transcription	Psoas Muscle	Psoas
2	chr3:142167600-142203000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:142170600-142203200	Weak transcription	Spleen	Spleen
4	chr3:142192800-142203000	Weak transcription	Pancreas	Pancrea
5	chr3:142198400-142214400	Weak transcription	Stomach Mucosa	stomach
6	chr3:142198800-142203000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:142199000-142203600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:142199200-142204400	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:142199200-142216000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:142200000-142215200	Weak transcription	NHLF	lung
11	chr3:142200000-142223200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:142200200-142206400	Weak transcription	HepG2	liver
13	chr3:142200400-142203000	Weak transcription	Right Ventricle	heart
14	chr3:142200400-142203200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:142200400-142203400	Weak transcription	Brain Anterior Caudate	brain
16	chr3:142200400-142204400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:142200400-142243800	Weak transcription	Fetal Heart	heart
18	chr3:142200600-142202800	Weak transcription	Colonic Mucosa	Colon
19	chr3:142200600-142203000	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:142200600-142203000	Weak transcription	Brain Substantia Nigra	brain
21	chr3:142200600-142203000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:142200600-142203000	Weak transcription	Hela-S3	cervix
23	chr3:142200600-142203200	Weak transcription	Aorta	Aorta
24	chr3:142200600-142203200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:142200600-142203200	Weak transcription	HSMMtube	muscle
26	chr3:142200600-142203400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:142200600-142203400	Weak transcription	Osteobl	bone
28	chr3:142200600-142203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:142200600-142204400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:142200600-142204800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:142200600-142205400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:142200600-142205400	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:142200600-142208200	Weak transcription	NHDF-Ad	bronchial
34	chr3:142200600-142210000	Weak transcription	HUVEC	blood vessel
35	chr3:142200600-142271800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:142200800-142202800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:142200800-142203200	Weak transcription	Gastric	stomach
38	chr3:142200800-142204400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:142200800-142206400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:142200800-142213400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:142200800-142214000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:142200800-142219800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:142201000-142203000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr3:142201000-142203000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:142201000-142203000	Weak transcription	Thymus	Thymus
46	chr3:142201000-142203200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:142201000-142203200	Weak transcription	Lung	lung
48	chr3:142201000-142203800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:142201000-142204200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:142201000-142204200	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links