Variant report

Variant	rs73240328
Chromosome Location	chr3:142310205-142310206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10935464	0.88[EUR][1000 genomes]
rs13316756	0.86[ASN][1000 genomes]
rs2140433	0.86[ASN][1000 genomes]
rs2140434	0.86[ASN][1000 genomes]
rs2177397	0.86[ASN][1000 genomes]
rs2229032	0.85[EUR][1000 genomes]
rs28365824	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28378300	0.84[ASN][1000 genomes]
rs28647471	0.87[ASN][1000 genomes]
rs28709617	0.87[ASN][1000 genomes]
rs3922731	0.88[EUR][1000 genomes]
rs4398471	0.87[ASN][1000 genomes]
rs4582093	0.86[ASN][1000 genomes]
rs55994893	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56383228	0.87[ASN][1000 genomes]
rs56397702	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58910647	0.86[ASN][1000 genomes]
rs60001529	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6440095	0.89[ASN][1000 genomes]
rs6440096	0.87[ASN][1000 genomes]
rs6440097	0.87[ASN][1000 genomes]
rs66597875	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73228757	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73228758	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73238195	0.82[EUR][1000 genomes]
rs73238200	0.88[EUR][1000 genomes]
rs73238202	0.88[EUR][1000 genomes]
rs73240305	0.94[EUR][1000 genomes]
rs73240309	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73240310	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73240314	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73240316	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73240318	0.84[EUR][1000 genomes]
rs73240323	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7633021	0.87[ASN][1000 genomes]
rs7638338	0.87[ASN][1000 genomes]
rs7647212	0.89[ASN][1000 genomes]
rs7647497	0.89[ASN][1000 genomes]
rs9813377	0.87[ASN][1000 genomes]
rs9816128	0.87[ASN][1000 genomes]
rs9816275	0.87[ASN][1000 genomes]
rs9826463	0.87[ASN][1000 genomes]
rs9847445	0.86[ASN][1000 genomes]
rs9857567	0.86[ASN][1000 genomes]
rs9858204	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9862686	0.86[ASN][1000 genomes]
rs9868309	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877556	chr3:141898980-142331360	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv877558	chr3:142123841-142331360	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv877559	chr3:142132749-142331360	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv877561	chr3:142152925-142331360	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142298200-142314400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:142298600-142314400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:142306200-142314400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:142306200-142314400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:142306200-142314400	Weak transcription	HSMMtube	muscle

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