The 2.0 version of rSNPBase

Variant report

Variant rs3936924
Chromosome Location chr1:95290913-95290914
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95286400-95293400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr1:95286400-95295800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:95286400-95295800 Weak transcription Right Ventricle heart
4 chr1:95286400-95298800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:95286600-95292400 Weak transcription Right Atrium heart
6 chr1:95286600-95296400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr1:95286600-95311800 Weak transcription Placenta Placenta
8 chr1:95286600-95319800 Weak transcription Lung lung
9 chr1:95287000-95292800 Weak transcription Brain Hippocampus Middle brain
10 chr1:95287000-95293000 Weak transcription HMEC breast
11 chr1:95287000-95293400 Weak transcription NHEK skin
12 chr1:95287000-95306200 Weak transcription Aorta Aorta
13 chr1:95287000-95308200 Weak transcription Brain Substantia Nigra brain
14 chr1:95287000-95319800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:95287200-95292800 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr1:95287200-95302400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:95287600-95292000 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr1:95287600-95293600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:95287600-95296600 Weak transcription iPS-20b Cell Line embryonic stem cell
20 chr1:95287800-95292400 Weak transcription Breast Myoepithelial Primary Cells Breast
21 chr1:95287800-95292400 Weak transcription Placenta Amnion Placenta Amnion
22 chr1:95287800-95293800 Weak transcription HUES48 Cell Line embryonic stem cell
23 chr1:95287800-95299000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr1:95287800-95320200 Weak transcription Rectal Smooth Muscle rectum
25 chr1:95288000-95293000 Weak transcription Liver Liver
26 chr1:95288000-95298600 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr1:95288400-95292200 Weak transcription Colonic Mucosa Colon
28 chr1:95288400-95312400 Weak transcription Fetal Muscle Leg muscle
29 chr1:95289000-95291400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:95289000-95293800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
31 chr1:95289000-95306400 Weak transcription Fetal Kidney kidney
32 chr1:95289200-95314800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:95289200-95318600 Weak transcription HSMMtube muscle
34 chr1:95289600-95293000 Weak transcription Stomach Mucosa stomach
35 chr1:95290200-95291800 Weak transcription Gastric stomach
36 chr1:95290200-95292400 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:95290400-95292400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:95290400-95293400 Strong transcription HepG2 liver
39 chr1:95290400-95298400 Strong transcription Fetal Intestine Large intestine
40 chr1:95290600-95291200 Strong transcription Fetal Stomach stomach
41 chr1:95290600-95295600 Strong transcription Duodenum Mucosa Duodenum
42 chr1:95290600-95297200 Strong transcription Rectal Mucosa Donor 29 rectum
43 chr1:95290800-95293200 Weak transcription Esophagus oesophagus
44 chr1:95290800-95294600 Weak transcription H1 Cell Line embryonic stem cell
45 chr1:95290800-95294600 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr1:95290800-95295000 Strong transcription Pancreas Pancrea
47 chr1:95290800-95296200 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015