Variant report

Variant	rs9432373
Chromosome Location	chr1:95275252-95275253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782992	1.00[ASN][1000 genomes]
rs10782993	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10874894	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1146458	1.00[ASN][1000 genomes]
rs2893277	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3860339	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3860345	1.00[ASN][1000 genomes]
rs3860348	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3860349	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3904553	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3904554	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3916208	1.00[ASN][1000 genomes]
rs3916432	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3936924	1.00[AMR][1000 genomes]
rs4847359	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6541370	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6541372	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6665321	1.00[ASN][1000 genomes]
rs6702030	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7528707	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7543977	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95258200-95284800	Weak transcription	Gastric	stomach
2	chr1:95268200-95276800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:95268200-95285000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:95269000-95282400	Weak transcription	Right Atrium	heart
5	chr1:95269800-95275400	Enhancers	Fetal Intestine Small	intestine
6	chr1:95270000-95285000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:95270400-95284800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:95271000-95275400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:95271800-95275400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:95272400-95285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:95272600-95284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:95272600-95284800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:95272600-95285400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:95272800-95278800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:95273800-95275600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:95274000-95275400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:95274000-95278000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:95274200-95284000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:95274800-95281800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:95274800-95283400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr1:95274800-95285200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr1:95275000-95275600	Weak transcription	HepG2	liver
23	chr1:95275200-95278800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr1:95275200-95278800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr1:95275200-95278800	Weak transcription	Fetal Intestine Large	intestine
26	chr1:95275200-95280000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:95275200-95285400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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