The 2.0 version of rSNPBase

Variant report

Variant rs3860339
Chromosome Location chr1:95269068-95269069
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95251000-95271600 Weak transcription Small Intestine intestine
2 chr1:95258200-95284800 Weak transcription Gastric stomach
3 chr1:95261800-95269200 Weak transcription Lung lung
4 chr1:95266200-95270000 Enhancers NHLF lung
5 chr1:95266400-95270000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:95267000-95269800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:95267000-95270200 Enhancers Fetal Stomach stomach
8 chr1:95267000-95270200 Enhancers Rectal Mucosa Donor 31 rectum
9 chr1:95267200-95269200 Enhancers Primary hematopoietic stem cells short term culture blood
10 chr1:95267200-95269400 Enhancers Primary hematopoietic stem cells blood
11 chr1:95267200-95269800 Enhancers Fetal Lung lung
12 chr1:95267200-95269800 Enhancers Rectal Smooth Muscle rectum
13 chr1:95267200-95270400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:95267200-95270400 Enhancers Stomach Mucosa stomach
15 chr1:95267200-95275200 Enhancers Fetal Intestine Large intestine
16 chr1:95267400-95269600 Enhancers HSMM muscle
17 chr1:95267400-95270200 Enhancers Colonic Mucosa Colon
18 chr1:95267400-95272600 Enhancers Fetal Muscle Leg muscle
19 chr1:95267600-95269600 Enhancers Duodenum Mucosa Duodenum
20 chr1:95267600-95269600 Enhancers Skeletal Muscle Male skeletal muscle
21 chr1:95267600-95269800 Genic enhancers Fetal Intestine Small intestine
22 chr1:95267800-95269200 Weak transcription Fetal Kidney kidney
23 chr1:95267800-95269600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:95267800-95269600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:95267800-95269600 Enhancers NHDF-Ad bronchial
26 chr1:95267800-95269800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:95267800-95269800 Enhancers Placenta Placenta
28 chr1:95267800-95269800 Enhancers Fetal Thymus thymus
29 chr1:95267800-95270000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:95267800-95270000 Enhancers Pancreas Pancrea
31 chr1:95267800-95270200 Enhancers Breast Myoepithelial Primary Cells Breast
32 chr1:95267800-95270200 Enhancers Cortex derived primary cultured neurospheres brain
33 chr1:95267800-95270400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr1:95267800-95270600 Enhancers Fetal Adrenal Gland Adrenal Gland
35 chr1:95267800-95270800 Enhancers Brain Angular Gyrus brain
36 chr1:95267800-95271600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
37 chr1:95267800-95271600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr1:95267800-95271600 Weak transcription Fetal Brain Male brain
39 chr1:95267800-95271600 Weak transcription HUVEC blood vessel
40 chr1:95267800-95271800 Enhancers Rectal Mucosa Donor 29 rectum
41 chr1:95267800-95272000 Weak transcription Primary T cells from cord blood blood
42 chr1:95267800-95272200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:95268000-95269200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:95268000-95269200 Enhancers Brain Cingulate Gyrus brain
45 chr1:95268000-95269200 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr1:95268000-95269400 Weak transcription Aorta Aorta
47 chr1:95268000-95269400 Enhancers Brain Anterior Caudate brain
48 chr1:95268000-95269600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
49 chr1:95268000-95269800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:95268000-95269800 Enhancers Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015