Variant report

Variant	rs7528707
Chromosome Location	chr1:95280491-95280492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95276233..95280832-chr1:95282185..95286731,5	MCF-7	breast:
2	chr1:95277084..95278740-chr1:95279136..95280803,2	K562	blood:

Variant related genes	Relation type
ENSG00000224081	Chromatin interaction
ENSG00000143036	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782992	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10782993	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10874894	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1146458	1.00[ASN][1000 genomes]
rs2893277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3860339	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3860345	1.00[ASN][1000 genomes]
rs3860348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3860349	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3904553	1.00[ASN][1000 genomes]
rs3904554	1.00[ASN][1000 genomes]
rs3916208	1.00[ASN][1000 genomes]
rs3916432	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3936924	0.83[AMR][1000 genomes]
rs4847359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6541370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6541372	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6665321	1.00[ASN][1000 genomes]
rs6702030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7543977	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9432373	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95258200-95284800	Weak transcription	Gastric	stomach
2	chr1:95268200-95285000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:95269000-95282400	Weak transcription	Right Atrium	heart
4	chr1:95270000-95285000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:95270400-95284800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:95272400-95285000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:95272600-95284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:95272600-95284800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:95272600-95285400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:95274200-95284000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:95274800-95281800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr1:95274800-95283400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:95274800-95285200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:95275200-95285400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:95278800-95281000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:95279000-95283800	Weak transcription	Fetal Intestine Large	intestine
17	chr1:95279400-95284800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr1:95279600-95283800	Weak transcription	Fetal Intestine Small	intestine
19	chr1:95279600-95284800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:95280000-95285400	Weak transcription	Esophagus	oesophagus

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