The 2.0 version of rSNPBase

Variant report

Variant rs3904553
Chromosome Location chr1:95246508-95246509
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95239200-95248600 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr1:95239400-95249000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:95240000-95247000 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr1:95240000-95249000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:95240800-95249000 Weak transcription Placenta Amnion Placenta Amnion
6 chr1:95242400-95248600 Weak transcription HMEC breast
7 chr1:95242600-95248800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:95242600-95249000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:95242600-95249000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:95242600-95249000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:95242600-95268000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:95243000-95249000 Weak transcription Fetal Intestine Small intestine
13 chr1:95243200-95246800 Weak transcription Pancreas Pancrea
14 chr1:95243200-95265000 Weak transcription Fetal Intestine Large intestine
15 chr1:95243400-95248800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr1:95244600-95247800 Weak transcription Stomach Mucosa stomach
17 chr1:95244800-95251000 Enhancers Breast Myoepithelial Primary Cells Breast
18 chr1:95245000-95247800 Weak transcription Hela-S3 cervix
19 chr1:95245000-95248200 Weak transcription NHDF-Ad bronchial
20 chr1:95245200-95248200 Weak transcription Rectal Smooth Muscle rectum
21 chr1:95245600-95249000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:95245800-95248600 Weak transcription NHLF lung
23 chr1:95245800-95248800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:95245800-95248800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr1:95245800-95249000 Weak transcription Lung lung
26 chr1:95246200-95248600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015