Variant report

Variant	rs39379
Chromosome Location	chr7:103479069-103479070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10254112	0.84[CEU][hapmap];0.83[YRI][hapmap]
rs11761756	0.84[CEU][hapmap];0.83[CHD][hapmap];0.93[MEX][hapmap]
rs1510848	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs264361	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3914126	0.89[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3914132	0.84[CEU][hapmap];0.83[CHD][hapmap];0.93[MEX][hapmap]
rs3914133	0.84[CEU][hapmap]
rs3915118	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs39351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs39394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs39402	0.83[ASN][1000 genomes]
rs39407	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs4727577	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6465944	0.84[CEU][hapmap];0.83[CHD][hapmap];1.00[MEX][hapmap]
rs7809141	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs39379	TFR2	cis	cerebellum	SCAN
rs39379	MYL10	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103461200-103482400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:103466600-103481800	Weak transcription	K562	blood
3	chr7:103473200-103495200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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