Variant report
| Variant | rs39394 |
|---|---|
| Chromosome Location | chr7:103489320-103489321 |
| allele | A/T |
| Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| rs_ID | r2[population] |
|---|---|
| rs10254112 | 0.85[CEU][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs11761756 | 0.84[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs12705166 | 0.85[AMR][1000 genomes] |
| rs1510848 | 0.80[CHB][hapmap] |
| rs1524802 | 0.82[AMR][1000 genomes] |
| rs1541540 | 0.82[AMR][1000 genomes] |
| rs264361 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3857814 | 0.82[AMR][1000 genomes] |
| rs3857815 | 0.82[AMR][1000 genomes] |
| rs3914123 | 0.82[AMR][1000 genomes] |
| rs3914126 | 0.89[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs3914131 | 0.82[AMR][1000 genomes] |
| rs3914132 | 0.84[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs3914133 | 0.85[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs3915118 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs39351 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs39379 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs39402 | 0.91[ASN][1000 genomes] |
| rs39407 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4107712 | 0.82[AMR][1000 genomes] |
| rs4727577 | 0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4727578 | 0.82[AMR][1000 genomes] |
| rs6465940 | 0.82[AMR][1000 genomes] |
| rs6465943 | 0.82[AMR][1000 genomes] |
| rs6465944 | 0.84[CEU][hapmap];0.85[AMR][1000 genomes] |
| rs6958221 | 0.82[AMR][1000 genomes] |
| rs7357331 | 0.85[AMR][1000 genomes] |
| rs7809141 | 0.91[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1843940 | chr7:103421702-103590285 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1030128 | chr7:103489028-103517045 | Enhancers Weak transcription Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103473200-103495200 | Weak transcription | HepG2 | liver |
| 2 | chr7:103486000-103497800 | Weak transcription | K562 | blood |





