Variant report

Variant	rs3949113
Chromosome Location	chr11:59457063-59457064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17153914	0.86[AFR][1000 genomes]
rs17153928	0.86[AFR][1000 genomes]
rs17153977	0.91[AFR][1000 genomes]
rs17153987	0.89[AFR][1000 genomes]
rs17154038	1.00[AMR][1000 genomes]
rs4040	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102198	1.00[AMR][1000 genomes]
rs7103832	0.86[AFR][1000 genomes]
rs7116954	1.00[AMR][1000 genomes]
rs7120176	0.89[AFR][1000 genomes]
rs7125454	0.89[AFR][1000 genomes]
rs7128845	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517878	chr11:59441271-59480969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59448800-59459600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59455200-59457400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:59455600-59457400	Enhancers	Fetal Intestine Large	intestine
4	chr11:59457000-59457400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:59457000-59458400	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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