Variant report

Variant	rs7125454
Chromosome Location	chr11:59391561-59391562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59379168..59382086-chr11:59390043..59391768,2	MCF-7	breast:
2	chr11:59389914..59392610-chr11:59398281..59399870,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153863	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153877	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153928	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153977	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3949113	0.89[AFR][1000 genomes]
rs4040	0.86[AFR][1000 genomes]
rs7103832	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120176	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128845	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927216	1.00[AMR][1000 genomes]
rs7942872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59384400-59396600	Weak transcription	Fetal Thymus	thymus
2	chr11:59384400-59396800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:59384400-59397400	Weak transcription	Adipose Nuclei	Adipose
4	chr11:59384400-59402600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:59384400-59404400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:59384800-59395200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:59384800-59396800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:59384800-59396800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:59384800-59397000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:59384800-59397200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:59384800-59397200	Weak transcription	Liver	Liver
12	chr11:59384800-59402600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:59384800-59402800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:59384800-59404600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:59384800-59404800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:59385000-59396600	Weak transcription	Primary T cells from cord blood	blood
17	chr11:59385000-59404400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:59385000-59404800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:59385400-59402800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:59385400-59402800	Weak transcription	Dnd41	blood
21	chr11:59385400-59403000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:59385400-59404200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:59385600-59403000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:59386600-59402800	Weak transcription	Placenta	Placenta
25	chr11:59390400-59393200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:59390800-59391600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:59390800-59391600	Enhancers	HepG2	liver
28	chr11:59390800-59397200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:59391200-59397400	Weak transcription	A549	lung
30	chr11:59391200-59402400	Weak transcription	Muscle Satellite Cultured Cells	--

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